Locus 655

Sequence ID 2L_DroMel_CAF1
Location 1,957,494 – 1,957,603
Length 109
Max. P 0.528066
window1075

overview

Window 5

Location 1,957,494 – 1,957,603
Length 109
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.42
Mean single sequence MFE -46.34
Consensus MFE -28.00
Energy contribution -27.20
Covariance contribution -0.80
Combinations/Pair 1.25
Mean z-score -2.36
Structure conservation index 0.60
SVM decision value -0.01
SVM RNA-class probability 0.528066
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1957494 109 + 22407834
AUGUGUAACUAGGACGAAGGCGGCC---GUGGACAAUGGCCAGCGAUGAG-GACCUCUCAAAGGGAAACUCAACAGCUGCCCGAGGACUCGUCCUCCGUCAUUC-------GUCCUGCGC
..((((....(((((((((((((((---((.....))))))(((..((((-..(((.....)))....))))...)))))).(((((....))))).....)))-------))))))))) ( -46.00)
>DroSim_CAF1 1881 109 + 1
AUGUGUAACUAGGACGAAGGCGGCC---GUGGACAAUGGCCGGCGAUGAG-GACCUCUCAAAGGGAAACUCAACAGCUGCCCGGGGACUCGUCCGCCGUCAUUC-------GUCCUGCGC
..((((....(((((((((((((((---((.....))))))(((((((((-..(((......(((...((....))...))))))..))))).))))))).)))-------))))))))) ( -50.20)
>DroEre_CAF1 9189 109 + 1
AUGUGUAACUAGGACGAAGGCGGCC---GUGGACAAUGGCCGGCGAUGAG-GGCCUCUCAAAGGGAAACUCGACAGCUGCCCGGGGACUCGUCCUUCGUCCUGC-------GUCCUGCGC
..(((((((((((((((((((((((---((.....)))))))((((...(-(((..((....((....))....))..))))(....)))))))))))))))).-------))..))))) ( -49.80)
>DroYak_CAF1 6879 119 + 1
AUGUGUAACUAGGACGAAGGCGGCCAUGGUGGACAAUGGCCGGCGAUGAG-GGCCUCUCAAAGGGAAACUCAACAGCUGCCCGGGGACUCGUCCUUCGUCCUGCAUCCUUCGUCCUGCGC
..((((....(((((((((((((((((........)))))))((((((((-(((..((....((....))....))..)))).((((....)))))))))..))..)))))))))))))) ( -52.20)
>DroAna_CAF1 29623 102 + 1
AUGUGUAACUAGGACGAAAACACGA---CUGGACAAUGGCCGGUGAUGAGAGGCCUCUCAAAGGGAAACUCAACAGCUGCCCGGGGAUUCGUCCUU-----UUC-------GUCCUA---
.........(((((((((((.....---..((((...((((..........))))((((...(((...((....))...))).))))...))))))-----)))-------))))))--- ( -33.51)
>consensus
AUGUGUAACUAGGACGAAGGCGGCC___GUGGACAAUGGCCGGCGAUGAG_GGCCUCUCAAAGGGAAACUCAACAGCUGCCCGGGGACUCGUCCUUCGUCAUUC_______GUCCUGCGC
.........((((((......................((.((((..((((...(((......)))...))))...)))).))(((((....)))))...............))))))... (-28.00 = -27.20 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:08 2006