Locus 6549

Sequence ID 2L_DroMel_CAF1
Location 18,436,776 – 18,436,885
Length 109
Max. P 0.983519
window10450

overview

Window 0

Location 18,436,776 – 18,436,885
Length 109
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 93.67
Mean single sequence MFE -25.36
Consensus MFE -19.94
Energy contribution -19.82
Covariance contribution -0.12
Combinations/Pair 1.18
Mean z-score -2.81
Structure conservation index 0.79
SVM decision value 1.95
SVM RNA-class probability 0.983519
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18436776 109 + 22407834
UUUCAUUUGC-CGGCAAAACGAAAACAAUAAUUCAGCUCAGCGAGCUGCUGCUGAACUAGCAGAAAGCGACAAAAAAAUGUCUACGGCUCAAGAAAAAAGUAUGAAA-AAA
((((....((-((((..................((((((...))))))((((((...))))))...))((((......))))..))))....))))...........-... ( -27.40)
>DroSec_CAF1 275286 111 + 1
UUUCAUUUGCCCGGCAAAACGAAAACAAUAAUUCAGCUCAGCGAGCUGCUGCUGAACCAGCAGAAAGCGACGAAAAAAUGGCUACGGCUCAAGAAAAAAGUAUGAAAAAAA
((((((((((.((......))............((((((...))))))((((((...))))))...))))........((((....)).))..........)))))).... ( -24.60)
>DroSim_CAF1 289105 111 + 1
UUUCAUUUGCCCGGCAAAACGAAAACAAUAAUUCAGCUCAGCGAGCUGAUGCUGAACCAGCAGAAAGCGACGAAAAAAUGGCUACGGCUCAAGAAAAAAGUAUGAAAAAAA
((((((((((.((......))..........((((((((((....)))).))))))...)))))..............((((....)).))...........))))).... ( -24.80)
>DroEre_CAF1 275762 109 + 1
UUUUAUUUGCCCGGCAAAACGAAAACAAUAAUUCAGCUCAGCGAGCUGCUGCUGAACCAGCAGAAAGCGGCGAAAAAAUUGCUAAGGCUCAAGAAAAAUGUAUGAAA--AA
........(((..((..................((((((...))))))((((((...))))))...))(((((.....)))))..)))...................--.. ( -24.40)
>DroYak_CAF1 290675 109 + 1
UUUUAUUUGCCCGGCAAAACGAAAACAAUAAUUCAGCUCAGCGAGCUGCUGCUGAACCAGCAGAAAGCAACGAAAAAAUUGCCAAGGCUCAAAAAAAAAGUAUGAAA--AA
........(((.(((((................((((((...))))))((((((...))))))...............)))))..)))...................--.. ( -25.60)
>consensus
UUUCAUUUGCCCGGCAAAACGAAAACAAUAAUUCAGCUCAGCGAGCUGCUGCUGAACCAGCAGAAAGCGACGAAAAAAUGGCUACGGCUCAAGAAAAAAGUAUGAAA_AAA
((((....(((.(((..................((((((...))))))((((((...)))))).................)))..)))....))))............... (-19.94 = -19.82 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:56 2006