| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,433,450 – 18,433,546 |
| Length | 96 |
| Max. P | 0.993705 |
| Location | 18,433,450 – 18,433,546 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 84.91 |
| Mean single sequence MFE | -26.32 |
| Consensus MFE | -20.58 |
| Energy contribution | -21.22 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.91 |
| Structure conservation index | 0.78 |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.993705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18433450 96 + 22407834 ACCCCCCACCUGUCCAACUGCCCAACUGCCCACUUUUCCUGCCAUUUCCCAUGCGCAUGUAAAAGUGGGCGGCAGCGACUUAAUUGCAUGCACGAA ...........(((...(((((.....(((((((((((.((((((.....))).))).).))))))))))))))).)))................. ( -29.30) >DroSec_CAF1 271874 94 + 1 GC--CCCACCUGUCCAACUGCCCACCUGCCCACUUUUCCUGCCAUUUCGCAUUCGCAUAUAAAAGUGGGCGGCAGCGACUUAAUUGCAUGCACGAA ((--.......(((...(((((.....((((((((((..(((.(........).)))...))))))))))))))).)))......))......... ( -26.62) >DroSim_CAF1 285749 94 + 1 UC--CCCACCUGCCCAACUGCCCACCUGCCCACUUUUCCUGCCAUUUCGCAUCCGCAUGUAAAAGUGGGCGGCAGCGACUUAAUUGCAUGCACGAA ..--....(.(((.....((((.....(((((((((((.(((............))).).))))))))))))))((((.....))))..))).).. ( -26.20) >DroEre_CAF1 272545 87 + 1 GC--CCCACCUGCC-------CCACCUGCCCACUUUUCCUGCCACUUCCCAUCGGCAUGUAAAAGUGGGAGCCAGCGACUUAAUUGCAUGCACGAA ..--....(.(((.-------....((.((((((((((.((((..........)))).).)))))))))))...((((.....))))..))).).. ( -23.10) >DroYak_CAF1 287087 78 + 1 GC--CCCA----------------CCUGCCCACUUUUCCUGCCAUUUCCCAUCGGCAUGUAAAAGUGGGCACCAGCGACUUAAUUGCAUGCACGAA ((--....----------------..((((((((((((.((((..........)))).).)))))))))))...((((.....))))..))..... ( -26.40) >consensus GC__CCCACCUGCCCAACUGCCCACCUGCCCACUUUUCCUGCCAUUUCCCAUCCGCAUGUAAAAGUGGGCGGCAGCGACUUAAUUGCAUGCACGAA ..........................((((((((((((.(((............))).).)))))))))))(((((((.....)))).)))..... (-20.58 = -21.22 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:53 2006