| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,432,288 – 18,432,391 |
| Length | 103 |
| Max. P | 0.728697 |
| Location | 18,432,288 – 18,432,391 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 83.09 |
| Mean single sequence MFE | -22.47 |
| Consensus MFE | -16.54 |
| Energy contribution | -17.12 |
| Covariance contribution | 0.58 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.728697 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18432288 103 + 22407834 UGGGUUAAGCUCACGCACACGCACAUCCAUUCAUCGCACACAUAUGUAC---CACAUGUGAAUGUGGCACAAUAUUU-UCAGGCCAAUUUUUACUUUGAUCCAUUUA (((((((((.....((....)).............((....((((((.(---(((((....)))))).)).))))..-....))..........))))))))).... ( -19.90) >DroSec_CAF1 270743 106 + 1 UGGGUUAAGCUCACGCACACACACAUGCACUCAUCGCACACAUAUGUACAUGCAUAUGUGAAUGUGGCACAAUAUUU-UCAGGCCAAUUUUUACUUUGAUCCAUUUA ((((((((((....)).....(((((((.......)).(((((((((....))))))))).)))))...........-.................)))))))).... ( -25.50) >DroSim_CAF1 284618 106 + 1 UGGGUUAAGCUCACGCACACACGCAUGCACUCAUCGCACACAUAUGUACAUACAUAUGUGAAUGUGGCACAAUAUUU-UCAGGCCAAUUUUUACUUUGAUCCAUUUA ((((((((((....)).((((.(((((....))).)).(((((((((....)))))))))..))))...........-.................)))))))).... ( -25.00) >DroEre_CAF1 271364 107 + 1 UGGGUUAAGCUCACGCACACGCACACACACUCAUCGCACACAUGCAUAUACUCGUAUGUGAAUGUGGCACAAUAUUUUUUCGGCCAAUUUUUACUUUGAUCCAUUUA (((((((((.....((....)).............((.(((((.((((((....)))))).)))))))..........................))))))))).... ( -23.10) >DroYak_CAF1 285939 92 + 1 UGGGUUAAGCUCACGCACACGC------ACUCAUCGCACACAUA--------UGUAUGUGAAUGUGGCACAAUAUUU-UCAGGCCAAUUUUUACUUUGAUCCAUUUA ((((((((((.(((((....))------.....(((((.((...--------.)).)))))..))))).........-..((...........)))))))))).... ( -18.50) >DroAna_CAF1 254469 94 + 1 UGGGUUAAGCCUUUCCACACACACAUAUGUA---CACACACA-A------UGCACAUGUG--UGUGGCAUAAUAUUU-UCCGGCCAAUUUUUACUUUGAUCCAUUUA (((((((((...........((((((((((.---((......-.------)).)))))))--)))(((.........-....))).........))))))))).... ( -22.82) >consensus UGGGUUAAGCUCACGCACACACACAUACACUCAUCGCACACAUAUGUAC_U_CAUAUGUGAAUGUGGCACAAUAUUU_UCAGGCCAAUUUUUACUUUGAUCCAUUUA (((((((((.............................(((((((........)))))))....((((..............))))........))))))))).... (-16.54 = -17.12 + 0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:52 2006