Locus 6545

Sequence ID 2L_DroMel_CAF1
Location 18,428,020 – 18,428,111
Length 91
Max. P 0.925311
window10445

overview

Window 5

Location 18,428,020 – 18,428,111
Length 91
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 84.86
Mean single sequence MFE -27.01
Consensus MFE -17.68
Energy contribution -18.48
Covariance contribution 0.80
Combinations/Pair 1.20
Mean z-score -2.73
Structure conservation index 0.65
SVM decision value 1.17
SVM RNA-class probability 0.925311
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18428020 91 - 22407834
GUGGAGA-----GCCAAGGAAGCGGGCCGUGGAAAAUGGGAAGGAGAAAAAAAUCUUGGGG-AAACUUGUGUUUGACUUGCAGCUUUCUUGGCUUAC
.....((-----(((((((((((..((.((.(((.........((((......))))(((.-...)))...))).))..)).))))))))))))).. ( -30.50)
>DroSim_CAF1 280282 90 - 1
GUGGAAA-----GCCAAGGAAGCGGGCCGAGGAAAAUGGGAAUGAGAAA-AAAUCUUGGGA-AAACUUGUGUUUGACUUGCAGCUUUCUUGGCUUAC
.....((-----(((((((((((..((.(((..(((((.((..((((..-...))))(...-...))).)))))..))))).))))))))))))).. ( -28.90)
>DroEre_CAF1 266841 86 - 1
GUGGAAA-----GCCAAGGCGGCGGGCCGAGGAAAAUGGG-----GAAAAAAAUCUUGUGG-AAACUUGUGUUUGACUUGCAGCUUUCUUGGCUUAC
.....((-----(((((((.(((..((.(((..((((.((-----((......))))..(.-...)....))))..))))).))).))))))))).. ( -26.00)
>DroYak_CAF1 281032 85 - 1
GUGGAAA-----GCUAAGGAAGCGGGCCGAGGAAAAUGG------GAAAAAAAUCUUGGGG-AAACUUGUGUUUGACUUGCAGCUUUCUUGGCUUAC
.....((-----(((((((((((..((.(((..((((((------((......))))(((.-...)))..))))..))))).))))))))))))).. ( -29.20)
>DroAna_CAF1 246894 88 - 1
GUGGAAAGGAAAGCACAGGAAGCGGGCCAAUUAAA-U--------GCAAAAAAUCUUGGGCAAAACUUGUGUUUGACUUGCAGCUUUUCUGGCUUAC
..........((((.((((((((..((...(((((-(--------((((.................))))))))))...)).)).)))))))))).. ( -20.43)
>consensus
GUGGAAA_____GCCAAGGAAGCGGGCCGAGGAAAAUGGG_____GAAAAAAAUCUUGGGG_AAACUUGUGUUUGACUUGCAGCUUUCUUGGCUUAC
............(((((((((((...(((((.......................)))))...((((....))))........))))))))))).... (-17.68 = -18.48 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:51 2006