Locus 6544

Sequence ID 2L_DroMel_CAF1
Location 18,425,415 – 18,425,523
Length 108
Max. P 0.598159
window10444

overview

Window 4

Location 18,425,415 – 18,425,523
Length 108
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 80.16
Mean single sequence MFE -22.82
Consensus MFE -13.42
Energy contribution -13.95
Covariance contribution 0.53
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.59
SVM decision value 0.13
SVM RNA-class probability 0.598159
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18425415 108 - 22407834
ACAAACACAAAAAACAGACAGGAGUAUAUGUAUGUGCAUA--UGUACAUACAAACGUAGUUAUGGGCGAGGGAAACACAUUCUGUCAGUCAUUUGGCAGCUCUGGCCAAC
..................((.((.(((.(((((((((...--.)))))))))...))).)).))(((.((((.........(((((((....))))))))))).)))... ( -29.90)
>DroSec_CAF1 265637 104 - 1
ACAAACACAAAAAACAGACAGGAGUAUAUGUA----CAUA--UGUGCAUACAAACGUAGUUAUAGGCGAGGGAAACACAUUCUGUCAGUCAUUUGGCAGCUCUGGCCAAC
................(((((((((.((((((----(...--.)))))))....(((........)))..(....))).)))))))......(((((.......))))). ( -24.60)
>DroSim_CAF1 277729 104 - 1
ACAAACACAAAAAACAGACAGGAGUAUAUGUA----CAUA--UGUGCAUACAAACGUAGUUAUAGGCGAGGGAAACACAUUCUGUCAGUCAUUUGGCAGCUCUGGCCAAC
................(((((((((.((((((----(...--.)))))))....(((........)))..(....))).)))))))......(((((.......))))). ( -24.60)
>DroEre_CAF1 264298 92 - 1
ACAAACACAAAAAACAGACAGGAGUA------------------UACAUACGAACAUAGUUAUAGGCGAGGGAAACACAUUCUGUCAGUCAUUUGGCAGCUCUGGCCAAC
.......................(((------------------....))).............(((.((((.........(((((((....))))))))))).)))... ( -17.00)
>DroYak_CAF1 278538 91 - 1
ACAAACACAAAAAACAGACAGGA-UG------------------UACAUACAAACAUAGUUAUAGGCGAGGGAAACACAUUCUGUCAGUCAUUUGGCAGCUCUGGCCAAC
................(((((((-((------------------(.............((.....))...(....)))))))))))......(((((.......))))). ( -21.10)
>DroAna_CAF1 244347 95 - 1
ACAAACAAAUA-AAAAGACACAAAUAUAUGUA----CAAACAUGGCCGUACA--------GAUGGGCCA--GAAGCAUAUUCUGUCAGUCAGUUGGCGUCCCUGGCAAAG
...........-....((((.....((((((.----......(((((.....--------....)))))--...))))))..)))).(((((..((...))))))).... ( -19.70)
>consensus
ACAAACACAAAAAACAGACAGGAGUAUAUGUA____CAUA__UGUACAUACAAACGUAGUUAUAGGCGAGGGAAACACAUUCUGUCAGUCAUUUGGCAGCUCUGGCCAAC
................................................................(((.((((.........(((((((....))))))))))).)))... (-13.42 = -13.95 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:50 2006