Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,423,907 – 18,424,023 |
Length | 116 |
Max. P | 0.601443 |
Location | 18,423,907 – 18,424,023 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.75 |
Mean single sequence MFE | -16.32 |
Consensus MFE | -13.18 |
Energy contribution | -12.98 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -1.52 |
Structure conservation index | 0.81 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18423907 116 - 22407834 -UAU-ACUCUUACAC-AACGCCUUGUAAAAUGGCCACUUCAUAUGGCACCUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAGAAC-CAAC -...-.((((((((.-.......)))))..(((((........(((((......((((....))))...)))))...(((((((((......))))))))).).)))).)))...-.... ( -19.90) >DroSec_CAF1 264121 117 - 1 -UAU-ACUCUAGCACCAUCGCCUUGUAAAAUGGCCACUUCAUUCGGCACCUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAAAAC-CAAC -..(-((....((......))...)))...(((((.........((((......((((....))))...))))....(((((((((......))))))))).).)))).......-.... ( -16.30) >DroSim_CAF1 276213 114 - 1 -----ACUCUAGCACCAUCGCCUUGUAAAAUGGCCACUUCAUUCGGCACCUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAAAAC-CAAC -----..(((.((......)).........(((((.........((((......((((....))))...))))....(((((((((......))))))))).).)))))))....-.... ( -16.00) >DroYak_CAF1 277040 115 - 1 CUUG-ACUCUAGC---AACUCCUUAUAAAAUGGCCACUUCAUACAGCAACUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAAAAC-CAAC ((((-.(((((((---(............((((.....))))............((((....))))...)))))...(((((((((......))))))))).))).)))).....-.... ( -17.00) >DroAna_CAF1 242658 116 - 1 -UUUACCUCUGUC---AAUACCCAAUGAAAUCGCCACAUCGUAUAGCACCUACUUGAACCCAUUCAUUGUGUUUCCAAAUUGAAUUCUCACAAAUUCAAUUCGAGCCAAGAAAACCCAAC -.....(((((..---(((((..((((((...((...........)).......((....)))))))))))))..))(((((((((......))))))))).)))............... ( -12.40) >consensus _UAU_ACUCUAGCAC_AACGCCUUGUAAAAUGGCCACUUCAUACGGCACCUACUUGAACCCAUUCAUUCUGCUACCAAAUUGAAUUCUCGCAAAUUCAAUUCGAGCCAAGAAAAC_CAAC ..............................(((((.........((((......((((....))))...))))....(((((((((......))))))))).).))))............ (-13.18 = -12.98 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:49 2006