Locus 6542

Sequence ID 2L_DroMel_CAF1
Location 18,423,382 – 18,423,491
Length 109
Max. P 0.795165
window10442

overview

Window 2

Location 18,423,382 – 18,423,491
Length 109
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 81.69
Mean single sequence MFE -24.30
Consensus MFE -18.16
Energy contribution -19.08
Covariance contribution 0.92
Combinations/Pair 1.04
Mean z-score -1.81
Structure conservation index 0.75
SVM decision value 0.60
SVM RNA-class probability 0.795165
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18423382 109 + 22407834
GCGUAGCUUAAAUA----------UAUGAUACGAUAUUGAAACACAUUAUUAAAUAAUCGCGACAGCAUAGGGAAUUUUCCUCUGUGCCUUUUUGUGGCAUUGCAAUCUGCAACACAAU
.((((.(.......----------...).))))..((((....................((.((((((((((((....))).)))))).....))).)).((((.....))))..)))) ( -21.40)
>DroSec_CAF1 263631 93 + 1
--------------------------UGAUACGAUAUUGAAACACAUUAUUAAAUAAUCGCUACAGCAUAGGGAAUUUUCCUCGGUGCCUUCUUGUGGCAUUGCAAUCUGCAACACAAU
--------------------------.........((((....................((((((((((.((((....))))..)))).....)))))).((((.....))))..)))) ( -18.30)
>DroSim_CAF1 275695 119 + 1
GCGUAGCUUAAAUGUUUAUAUAUUUAUGAUACGAUAUUGAAACACAUUAUUAAAUAAUCGCGACAGCAUAGGGAAUUUUCCUCGGUGCCUUCUUGUGGCAUUGCAAUCUGCAACACAAU
(((((...(((((((....)))))))...)))((((.((.....)).))))........))((..((((.((((....))))..))))..))(((((...((((.....))))))))). ( -23.80)
>DroEre_CAF1 262301 119 + 1
CCGUGCUUUCAAAUUUAAUAUAUUUAUGAUAACAUAUUGAAACACAUUAUUCAAUAAUCGCCACAGCAUAGGGAAUUUUCCGCUGUGCCUUCUUGUGGCUUUGCAAUCUGCAACACAAU
..(((.............................(((((((........)))))))...(((((((((((((((....))).)))))).....)))))).((((.....)))))))... ( -29.00)
>DroYak_CAF1 276529 119 + 1
CCGUACUUUCAAAGCUUAUAUACUUAAGAUAUCACAUUGAAACACAUUAUUAAAUAAUCGCCACAGCAUAGGGAAUUUUGCUCUGUGCCUUCUUGUGGCGUUGCAAUCUGCAACACAAU
..((..((((((..((((......))))........)))))).))..............((((((((((((((.......)))))))).....))))))(((((.....)))))..... ( -29.00)
>consensus
CCGUACCUUAAAAG_U_AUAUA_UUAUGAUACGAUAUUGAAACACAUUAUUAAAUAAUCGCCACAGCAUAGGGAAUUUUCCUCUGUGCCUUCUUGUGGCAUUGCAAUCUGCAACACAAU
...................................((((....................(((((((((((((((....))).)))))).....)))))).((((.....))))..)))) (-18.16 = -19.08 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:48 2006