| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,422,765 – 18,422,863 |
| Length | 98 |
| Max. P | 0.821436 |
| Location | 18,422,765 – 18,422,863 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.11 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -11.17 |
| Energy contribution | -11.07 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.68 |
| SVM RNA-class probability | 0.821436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18422765 98 + 22407834 ----------------AUGUUUCAGAAAUCCAAUUAAAA-GGACCUAAUACAUGUGCCAACCAUAUGGAGUGUAUUU-----AAAGCAUCCUUGAAAUUUCACAACAUUUAAUUGGAAAA ----------------............(((((((((((-(((.(((((((((...(((......))).))))))).-----..))..))))(((....))).....))))))))))... ( -20.50) >DroSec_CAF1 263033 103 + 1 ----------------AUGUUUCAGAAAUCCAAUUAAAA-GGACCUAAUACAUGUGCCAACCAUAUGGAGUGUAUUUACCAUAAAGCAUCCUUGAAAUUUCCCAACAUUUAAUUGGAAAA ----------------............((((((((((.-((....(((((((...(((......))).)))))))..))...........(((........)))..))))))))))... ( -19.70) >DroSim_CAF1 275075 98 + 1 ----------------AUGUUUCAGAAAUUCAAUUAAAA-AUACCUAAUACAUGUGCCAACCGUAUGGAGUGUAUUU-----AAAGCAUCCUUGAAAUUUCACAACAUUUAAUUGGAAAA ----------------............((((((((((.-......(((((((...(((......))).))))))).-----..........(((....))).....))))))))))... ( -14.80) >DroEre_CAF1 261681 98 + 1 ----------------ACGUUUGAAAAAUCCAAUUAAAA-GGAUCUAAUACAUGUGCCAACCAUAUGAAGUGUAUUU-----AAAGCAUCCUUGAAAUUUCACAACAUUUAAUUGGAAAA ----------------............(((((((((((-(((((((((((((....((......))..))))))).-----..)).)))))(((....))).....))))))))))... ( -18.50) >DroYak_CAF1 275910 98 + 1 ----------------GUGUUCAAAGAAUCCAAUUAAAA-GGACCUAAUACAUGUGCCAACCAUAUGAAGUGUAUUU-----AAAGCAUCCUUGAAAUUUCACAACAUUUAAUUGGAAAA ----------------............((((((((((.-(.........((((((.....))))))..(((.((((-----.(((....))).))))..)))..).))))))))))... ( -18.40) >DroAna_CAF1 241615 114 + 1 CAACUCCAACAAUGUUAUGU-UGAAAAACUCAAUUAAAAUGUGCCUAAAACAUGUAGAACCCACUUGAAUUACUUUU-----GAACGCUUUUGCAAAAUUCAUAGCAUUUAAUUACAAAA ..........((((((((((-(((.....)))).....((((.......))))((((((.(...(..((.....)).-----.)..).))))))......)))))))))........... ( -12.50) >consensus ________________AUGUUUCAAAAAUCCAAUUAAAA_GGACCUAAUACAUGUGCCAACCAUAUGAAGUGUAUUU_____AAAGCAUCCUUGAAAUUUCACAACAUUUAAUUGGAAAA ............................((((((((((............((((((.....))))))...................((....)).............))))))))))... (-11.17 = -11.07 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:47 2006