Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,416,094 – 18,416,213 |
Length | 119 |
Max. P | 0.529240 |
Location | 18,416,094 – 18,416,213 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.09 |
Mean single sequence MFE | -35.62 |
Consensus MFE | -23.38 |
Energy contribution | -23.43 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.07 |
Mean z-score | -1.40 |
Structure conservation index | 0.66 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.529240 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18416094 119 - 22407834 UCCCGUCGGAGUCUGGAGGCCAUGCGGUCGGCAUAAUAAAUAAUGACCGGCAUUCCUUUGUUGUAAUUGAAAAUGUUGGUCAUUCCUAGAUGGCGCAGCUAUGGAGAUGGAGCC-GUAGU ...((((...((((((.((((....))))............(((((((((((((..((((.......))))))))))))))))).))))))))))..(((((((........))-))))) ( -35.40) >DroGri_CAF1 305922 100 - 1 UUGGG-CUGCUGCUUGAGGCCAUGCGGUCGGCAUAAUAAAUAAUGACCGGCAUUCCUUUGUUGUAAUUGAAAAUGUUGGUCAUUCCGAGCCGG-GCAGCAGU------------------ ....(-(((((((((..((((....))))(((.........(((((((((((((..((((.......)))))))))))))))))....)))))-))))))))------------------ ( -37.72) >DroEre_CAF1 255178 119 - 1 UCCCUUCGGAGUCUGGAGGCCAUGCGGUCGGCAUAAUAAAUAAUGACCGGCAUUCCUUUGUUGUAAUUGAAAAUGUUGGUCAUUCCUAGAUGGGGCAGCUAUGGAGAUGGAGCC-GUAGU .((((.....((((((.((((....))))............(((((((((((((..((((.......))))))))))))))))).))))))))))..(((((((........))-))))) ( -36.20) >DroYak_CAF1 268712 119 - 1 UCCCUUCGGAGUCUGGAGGCCAUGCGGUCGGCAUAAUAAAUAAUGACCGGCAUUCCUUUGUUGUAAUUGAAAAUGUUGGUCAUUCCUAGAUGGCGCAGCUAUGGAGAUGGAGCC-GUAGU ......((..((((((.((((....))))............(((((((((((((..((((.......))))))))))))))))).))))))..))..(((((((........))-))))) ( -34.20) >DroMoj_CAF1 400963 96 - 1 G---G-GCACUGCUGGAGGCCAUGCGGUCGGCAUAAUAAAUAAUGACCGGCAUUCCUUUGUUGUAAUUGAAAAUGUUGGUCAUUCCGAGC-GG-CUAGCAGU------------------ .---.-..((((((((..(((((((.....)))).......(((((((((((((..((((.......)))))))))))))))))..).))-..-))))))))------------------ ( -32.00) >DroAna_CAF1 234903 112 - 1 --------GAGUCUGGAGGCCAUGCGGUCGGCAUAAUAAAUAAUGACCGGCAUUCCUUUGUUGUAAUUGAAAAUGUUGGUCAUUCCGAGAUGGGGCAGCCAUGGUGAUGGAGCCCCUAGA --------..(((((((((((....)))).............((((((((((((..((((.......))))))))))))))))))).))))(((((..((((....)))).))))).... ( -38.20) >consensus UCCCG_CGGAGUCUGGAGGCCAUGCGGUCGGCAUAAUAAAUAAUGACCGGCAUUCCUUUGUUGUAAUUGAAAAUGUUGGUCAUUCCGAGAUGG_GCAGCUAUGGAGAUGGAGCC_GUAGU ..........((((((.((((....))))............(((((((((((((..((((.......))))))))))))))))).))))))............................. (-23.38 = -23.43 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:45 2006