Locus 6536

Sequence ID 2L_DroMel_CAF1
Location 18,411,117 – 18,411,233
Length 116
Max. P 0.777354
window10433

overview

Window 3

Location 18,411,117 – 18,411,233
Length 116
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 89.40
Mean single sequence MFE -30.75
Consensus MFE -25.32
Energy contribution -26.56
Covariance contribution 1.24
Combinations/Pair 1.03
Mean z-score -1.58
Structure conservation index 0.82
SVM decision value 0.55
SVM RNA-class probability 0.777354
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18411117 116 + 22407834
GACCUCAACACGCGGCUUGCUUAUCAGAGCAACAACAGCUGCGACCAAGUCUCAGGUACAGUCAAGCCUCUACGGGUCGAAUAUCAUGGGUUCGUUUAUCCUAGACAAGCAUCUUA
(((.......((((((((((((....))))).....)))))))(((........)))...)))..((.((((.(((((((((.......)))))...))))))))...))...... ( -30.20)
>DroSec_CAF1 251379 116 + 1
GACCUCAACACGCGGCUUGCUUAUCAGAGCAACAACAGCUGCGACCAAGACUCAGGUACAGUCAAACCUCUUCGGGUCGAAUGUCAUAGGUUCGACUAUCCUAGACAAACAUCUUA
(((((.....((((((((((((....))))).....))))))).....((...((((........))))..)))))))...((((.((((.........))))))))......... ( -32.70)
>DroSim_CAF1 263051 114 + 1
GACCUCAACACGCGGCUUGCUUAUCAGAGCAACAACAGCUGCGACCAAGACUCAGGUACAGUCAAGCCUCUACGGGUCGAAUGUCAUAGGUUCGACUAUUCUAGAUUA--UUCUUA
(((.......((((((((((((....))))).....)))))))(((........)))...))).....((((..((((((((.......))))))))....))))...--...... ( -30.80)
>DroEre_CAF1 250067 116 + 1
GACCUCAACACGCGGCUUGCUUAUCAGAGCAACAACAGCUGCGACCCAGACACAGGUACAGUCAAACGUCUACGGGUCGAACUUUGUAGUUGCGACUAUCCUAGCCAAACAACUUG
.............((((...........(((((.((((...((((((((((....(......)....))))..))))))....)))).))))).........)))).......... ( -29.65)
>DroYak_CAF1 263016 116 + 1
GACCUCAACACGCGGCUUGCUUAUCAGAGCAACAACAGCUGCGACCAAGACACAGGUACAGUCAAACGUCUACGGGUCGAAUUUAAUAGCUCCGACUAUCCUAGACAAAAAACUUA
(((.......((((((((((((....))))).....)))))))(((........)))...)))....(((((..(((((.............)))))....))))).......... ( -30.42)
>consensus
GACCUCAACACGCGGCUUGCUUAUCAGAGCAACAACAGCUGCGACCAAGACUCAGGUACAGUCAAACCUCUACGGGUCGAAUGUCAUAGGUUCGACUAUCCUAGACAAACAUCUUA
(((.......((((((((((((....))))).....)))))))(((........)))...))).....((((..((((((((.......))))))))....))))........... (-25.32 = -26.56 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:39 2006