Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,410,457 – 18,410,601 |
Length | 144 |
Max. P | 0.998078 |
Location | 18,410,457 – 18,410,567 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 94.91 |
Mean single sequence MFE | -25.12 |
Consensus MFE | -20.98 |
Energy contribution | -21.30 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -2.96 |
Structure conservation index | 0.84 |
SVM decision value | 3.00 |
SVM RNA-class probability | 0.998078 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18410457 110 - 22407834 CUCAUUGUGUUGCGAUGCAAUUUCAAUGCAAAGCAAACAUGCAAACAGGCAACUGGCUGAAAUAUCUCAAAGCAACCAACUGAAAUCUCAAACUGCAUCUAAGCAUCUCA .((((((.(((((..((..((((((..((...(((....)))...(((....)))))))))))....))..)))))))).)))..........(((......)))..... ( -24.50) >DroSec_CAF1 250730 110 - 1 CUCAUUGUGUUGCGAUGCAAUUUCAAUGCAAAGCAAACAUGCAAACAGCCAACUGGCUGAAAUAUCUCAAAGCAACCAACUGAAAUCUCAAACUGCAUCUAAGCAUCUCA .((((((.(((((..((((.......))))..(((....)))...(((((....)))))............)))))))).)))..........(((......)))..... ( -25.40) >DroSim_CAF1 262393 110 - 1 CUCAUUGUGUUGCGAUGCAAUUUCAAUGCAAAGCAAACAUGCAAACAGCCAACUGGCUGAAAUAUCUCAAAGCAACCAACUGAAAUCUCAAACUGCAUCUAAGCAUCUCA .((((((.(((((..((((.......))))..(((....)))...(((((....)))))............)))))))).)))..........(((......)))..... ( -25.40) >DroEre_CAF1 249440 110 - 1 CUCAUUGUGUUGCGCUGCAAUUUGAAUGCAAAGCAAACAUGCUAACAGGCAACUGCCCGAAAUAUCUCAAAGCAACCAACUGAAAUCUCAAACUGCAUCUACGCAUCUCG .((((((.(((((..((((.......)))).((((....))))..(((....)))................)))))))).)))..........(((......)))..... ( -21.60) >DroYak_CAF1 262397 110 - 1 CUCCUUGUGUUGCGCUGCAAUUUCAAUGAAAAGCAAACAUGCAAACAGGCAACUGCCUGAAAUAUCUCAAAGCAGCCAACUGAAAUCUCGAACUGCAUCUACGCAUCUCA ........((((.(((((..............(((....)))...(((((....)))))............))))))))).........((..(((......)))..)). ( -28.70) >consensus CUCAUUGUGUUGCGAUGCAAUUUCAAUGCAAAGCAAACAUGCAAACAGGCAACUGGCUGAAAUAUCUCAAAGCAACCAACUGAAAUCUCAAACUGCAUCUAAGCAUCUCA .((((((.(((((..((((.......))))..(((....)))...(((((....)))))............)))))))).)))..........(((......)))..... (-20.98 = -21.30 + 0.32)
Location | 18,410,487 – 18,410,601 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.66 |
Mean single sequence MFE | -30.60 |
Consensus MFE | -23.38 |
Energy contribution | -23.70 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -2.91 |
Structure conservation index | 0.76 |
SVM decision value | 2.18 |
SVM RNA-class probability | 0.989691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18410487 114 - 22407834 UCCUGUGUCUGA------UGCAUCCCAAAGAUGCAGCAAUCUCAUUGUGUUGCGAUGCAAUUUCAAUGCAAAGCAAACAUGCAAACAGGCAACUGGCUGAAAUAUCUCAAAGCAACCAAC ...((.(..((.------((((((.....)))))).))..).))(((.(((((..((..((((((..((...(((....)))...(((....)))))))))))....))..)))))))). ( -29.90) >DroSec_CAF1 250760 120 - 1 UCCUGUGUCUGAUGCUGAUGCAUGCCAAAGAUGCAGCAAUCUCAUUGUGUUGCGAUGCAAUUUCAAUGCAAAGCAAACAUGCAAACAGCCAACUGGCUGAAAUAUCUCAAAGCAACCAAC ..((((((((.((((....)))).....))))))))........(((.(((((..((((.......))))..(((....)))...(((((....)))))............)))))))). ( -33.40) >DroSim_CAF1 262423 120 - 1 UCCUGUGUCUGAUGCUGAUGCAUCCCAAAGAUGCACCAAUCUCAUUGUGUUGCGAUGCAAUUUCAAUGCAAAGCAAACAUGCAAACAGCCAACUGGCUGAAAUAUCUCAAAGCAACCAAC ...((((((((((((....)))))....))))))).........(((.(((((..((((.......))))..(((....)))...(((((....)))))............)))))))). ( -33.30) >DroEre_CAF1 249470 104 - 1 ----------G------AAGCAUCCCAAAGAUGCACCAUGCUCAUUGUGUUGCGCUGCAAUUUGAAUGCAAAGCAAACAUGCUAACAGGCAACUGCCCGAAAUAUCUCAAAGCAACCAAC ----------.------..(((((.....)))))..........(((.(((((..((((.......)))).((((....))))..(((....)))................)))))))). ( -24.20) >DroYak_CAF1 262427 114 - 1 UCCUGUGCCAG------AAGCAUCCCAAAGAUGCAUCAUGCUCCUUGUGUUGCGCUGCAAUUUCAAUGAAAAGCAAACAUGCAAACAGGCAACUGCCUGAAAUAUCUCAAAGCAGCCAAC ......((..(------(.(((((.....))))).))..)).......((((.(((((..............(((....)))...(((((....)))))............))))))))) ( -32.20) >consensus UCCUGUGUCUGA_____AUGCAUCCCAAAGAUGCACCAAUCUCAUUGUGUUGCGAUGCAAUUUCAAUGCAAAGCAAACAUGCAAACAGGCAACUGGCUGAAAUAUCUCAAAGCAACCAAC ...................(((((.....)))))..........(((.(((((..((((.......))))..(((....)))...(((((....)))))............)))))))). (-23.38 = -23.70 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:38 2006