Locus 6534

Sequence ID 2L_DroMel_CAF1
Location 18,403,171 – 18,403,282
Length 111
Max. P 0.520530
window10430

overview

Window 0

Location 18,403,171 – 18,403,282
Length 111
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 80.60
Mean single sequence MFE -24.76
Consensus MFE -16.14
Energy contribution -16.78
Covariance contribution 0.64
Combinations/Pair 1.26
Mean z-score -1.60
Structure conservation index 0.65
SVM decision value -0.03
SVM RNA-class probability 0.520530
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18403171 111 - 22407834
CAACACCU-UGCGAGUUUGAUUUUUCGCUAA---AAUAU---GAAUUAGGAAAGCAAAUGGUACUAUUGUGUUGCCCACAACUGUUCAUAUGCAUUUCACAGGACUUGCGAUGUUUAU
.((((..(-(((((((((....((((.((((---.....---...))))))))(((.((((.((..(((((.....)))))..)))))).)))........))))))))))))))... ( -27.20)
>DroSec_CAF1 248180 105 - 1
CAACUCAUAUGCAAGUUUUAUUUUCCAC-------AUAU---CAA---ACAAUGCAAUUGGUACUAUUGUGUUGCCCACAACUGUUUAUAUGCAUUUCACAGGACUUGCGAUGUUUAU
.....(((.((((((((((........(-------((((---.((---(((..(((((.......)))))((((....))))))))))))))........)))))))))))))..... ( -20.99)
>DroSim_CAF1 259836 105 - 1
CAACUCAUAUGCAAGUUUUAUUUUCCAC-------AUAU---CAA---GCAAUGCAAUUGGUACUAUUGUGUUGCCCACAACUGUUUAUAUGCAUUUCACAGGACUUGCGAUGUUUAU
.....(((.((((((((((.........-------....---...---((((((((((.......)))))))))).......(((......)))......)))))))))))))..... ( -22.00)
>DroEre_CAF1 246828 107 - 1
UA--------GCAGGUCUGAUUUUUCACAAUGUUGAUAUGUUUAG---GCCAUGCAAAUGGUGCUAUUGUGUUGCCCACAACUGUUUAUAUGCAUUUCACAGGACUUGCGAUGUUUAU
..--------((((((((((....))..(((((..(((((..(((---(((((....)))))....(((((.....))))))))..)))))))))).....))))))))......... ( -27.60)
>DroYak_CAF1 259779 115 - 1
AAGCACCUAUGCAGGUCUGAUUUUGUACAAUGUUGAUAUGUUUAA---GCAAUGCAAACGGUUCUAUUGUGUUGCCCACGACUGUUUAUAUGCAUUUCACAGGACUUGCGAUGUUUAU
(((((....(((((((((.....(((..(((((.((((.(((...---(((((((((.........)))))))))....))))))).....)))))..)))))))))))).))))).. ( -26.00)
>consensus
CAACACAUAUGCAAGUUUGAUUUUCCAC_A_____AUAU___CAA___GCAAUGCAAAUGGUACUAUUGUGUUGCCCACAACUGUUUAUAUGCAUUUCACAGGACUUGCGAUGUUUAU
..........(((((((((......)......................(.((((((.((((.((..(((((.....)))))..)))))).)))))).)...))))))))......... (-16.14 = -16.78 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:36 2006