| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,400,176 – 18,400,290 |
| Length | 114 |
| Max. P | 0.974679 |
| Location | 18,400,176 – 18,400,290 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 76.24 |
| Mean single sequence MFE | -36.48 |
| Consensus MFE | -19.35 |
| Energy contribution | -20.35 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.53 |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.974679 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18400176 114 + 22407834 AACCCGGAGUGGAUUGGAGCGGCAGAACGGGCAAAGGCAGGCCGAGAGUCCUGGCAAGGAUAUUUGUCGAACCGGGAAGGCUGAAUGGCAGCAAUUAGCCACAAGCCAAACCAG ..(((((...(((((....((((.......((....))..))))..)))))(((((((....)))))))..)))))..((((...((((........))))..))))....... ( -40.30) >DroSec_CAF1 245268 114 + 1 AACCCGGAGUGGAUUGGAGCGGCAGAACGGGCAAAGGCAGUCCGAGAGUCCUGGCAAGGAUAUUUGUCGAACCAGGAAGGCUGAAUGGCAGCAAUUAGCCACAAGCCAAACCAG .....((..(((.((((..(((((((.(((((.......)))))...(((((....))))).)))))))..))))...((((((.((....)).)))))).....)))..)).. ( -41.00) >DroSim_CAF1 256908 114 + 1 AACCCGGAGUGGAUUGGAGCGGCAGAACGGGCAAAGGCAGUCCGAGAGUCCUGGCAAGGAUAUUUGUCGAACCAGGAAGGCUGAAUGGCAGCAAUUAGCCACAAGCCAAACCAG .....((..(((.((((..(((((((.(((((.......)))))...(((((....))))).)))))))..))))...((((((.((....)).)))))).....)))..)).. ( -41.00) >DroEre_CAF1 243954 96 + 1 AACCCGAAGUGGAUUGGAGC------------------GGGCCGAGAGUCCUGCGAAGGAUAUUUGUCGAACCAGGAAGGCUGAAUGGCAGCAAUUAGCCACAAGCCAAACCAG .........(((.((((.((------------------(((.(....).)))))....(((....)))...))))...((((...((((........))))..))))...))). ( -30.00) >DroYak_CAF1 256446 114 + 1 AGCCCAGACUGGAUUGGAGCUGGGAAACAGACAUUGGCAGGCCGAGAGUCCUGGGAAGGAUAUUUGUCGAACCAGGAAGGCUGAAUGGCAGCAAUUAGCCACAAGCCAAACCGG ..(((((.((.......))))))).........(((((.((((.....((((((....(((....)))...)))))).))))...((((........))))...)))))..... ( -38.30) >DroAna_CAF1 222214 89 + 1 ----CAAAUGGUAUUGGAA--------------------AGAGGACGACUCGGGCAAGGAUGUUGGCCAAACAAGGCUGGC-GAGCGAUAGCAAUUAGCCAAAAACGAAACCAU ----...(((((.(((...--------------------.(((.....))).(((.....(((..(((......)))..))-).((....)).....))).....))).))))) ( -28.30) >consensus AACCCGGAGUGGAUUGGAGCGGCAGAACGGGCAAAGGCAGGCCGAGAGUCCUGGCAAGGAUAUUUGUCGAACCAGGAAGGCUGAAUGGCAGCAAUUAGCCACAAGCCAAACCAG .........(((.((((...............................((((((...((.......))...)))))).((((((.((....)).)))))).....)))).))). (-19.35 = -20.35 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:35 2006