Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,395,955 – 18,396,064 |
Length | 109 |
Max. P | 0.996299 |
Location | 18,395,955 – 18,396,064 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 64.04 |
Mean single sequence MFE | -20.40 |
Consensus MFE | -10.15 |
Energy contribution | -11.40 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.29 |
Mean z-score | -2.47 |
Structure conservation index | 0.50 |
SVM decision value | 2.68 |
SVM RNA-class probability | 0.996299 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18395955 109 + 22407834 CAAAUUUUUUU-----------AAUUAGAAAUACUUGGCCCUUCUUCUGGGCCUCAGUUUUUCCGUUUUAAUUCAGUUUUUAUAAAACCACAUAGGACUCUCUACAACCAAAAUAUAAGA ...........-----------.....((((.(((.(((((.......)))))..))).)))).((((((.....((((.....))))....))))))...................... ( -17.40) >DroSec_CAF1 241020 108 + 1 CAAACCU-UUG-----------AAUUAGAUAGACUGGGCCUUUCUUCUAGGCCUCAGUUUAUUCAAUAAUAAUGCAUUUUAAUAAAAUCAAAUAGAUGUCCUUAGAUCCAAAAUAUAAUA ......(-(((-----------.(((..(((((((((((((.......))))).))))))))..)))......((((((..............)))))).........))))........ ( -22.14) >DroSim_CAF1 252671 108 + 1 CAAACCU-UCG-----------AAUUAGAAAGACCAGGCCUUUCUUCUAGGCCUUAGUUCUUUCAAUAUAAAUGCAUUUUAAUAAAAUCAAAUAGAAGGCCUUAGAUCCAAAAUAUAAUA ....(((-((.-----------.....((((((.(((((((.......))))))..).))))))....((((.....)))).............)))))..................... ( -21.40) >DroEre_CAF1 239730 108 + 1 CAAUCCU-UCAUAGAAUAAGUUUAUUAGAAUCACUGGUCCUUGCA-CAAG----CAGCUCUUCCCUAGUUGUUGCACUUUAAUAAAAACAAAUAUAU----UU--AGUAAAUAUGAAGGA ...((((-(((((...(((((.((((...............((((-...(----(((((.......))))))))))..............)))).))----))--).....))))))))) ( -20.65) >consensus CAAACCU_UCG___________AAUUAGAAAGACUGGGCCUUUCUUCUAGGCCUCAGUUCUUCCAAUAUAAAUGCAUUUUAAUAAAAUCAAAUAGAAGUCCUUAGAUCCAAAAUAUAAGA ...........................((((((((((((((.......))))).)))))))))......................................................... (-10.15 = -11.40 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:34 2006