| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,390,804 – 18,390,898 |
| Length | 94 |
| Max. P | 0.611759 |
| Location | 18,390,804 – 18,390,898 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.27 |
| Mean single sequence MFE | -18.64 |
| Consensus MFE | -7.08 |
| Energy contribution | -7.69 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.611759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18390804 94 + 22407834 AAUCC----------AAAAUCAAGGGU---CGACUAAACUCUGUGUGACGGCAGGGGAAUGAACAAAAUCCCCAAA-A--AUAUGCAACAAGAAAGUUUUUGCUC-CAACA .....----------........((..---(((..(((((...(((....((((((((.(......).)))))...-.--...))).)))....))))))))..)-).... ( -17.21) >DroSec_CAF1 234568 93 + 1 AAUCC----------AAAAUCAAGGGU---CGACCAAACUCUGUG-AACGGCAGGGGAAUCAACAAAAUCCCCAAA-A--AUAUGCAACACGAGAGUUUUUGCUA-CAACA .((((----------........))))---.....((((((((((-....((((((((..........)))))...-.--...)))..))).)))))))......-..... ( -19.71) >DroSim_CAF1 243102 93 + 1 AAUCC----------AAAAUCAAGGGU---CGACCAAACUCUGUG-AACGGCAGGGGAAUCAACAAAAUCCCCAAA-A--AUAUGCAACACGAAAGUUUUUACUC-CAACA .....----------....((((((((---.......))))).))-)..((..(((((..........)))))...-.--.........((....)).......)-).... ( -15.30) >DroEre_CAF1 235269 92 + 1 AAUCC----------AAAAUCAAGGGU---CGAGCAAACUCUGC--AGCAGCAGGGGAAUCAACAAAAUCCCCAAA-A--AUAUGCAACACAAAAGUUUUUGCUC-CCCUA .....----------.......((((.---.(((((((..((((--....)).(((((..........)))))...-.--..............))..)))))))-)))). ( -24.40) >DroYak_CAF1 245127 93 + 1 AAUUC----------AAAAUCAAGGGU---CGAGCAAACUCUGUU-AACAGCAGGGGAAUCAACAAAGUCCCCGAA-A--AUAUGCAACACAAAAGUUUUUGCUC-CAAUA .....----------............---.(((((((..((...-....((((((((..........)))))...-.--...)))........))..)))))))-..... ( -17.67) >DroAna_CAF1 213943 105 + 1 AAUCAGGAGCUUGGAAAAGUGAAGAAUAACUGAGAAUACUUGGG--GAGUGGAUGCUAACAAACAAAACAUCCAGAAAAUAUAUGGAAAA---AAA-UGUUGCCCAGAAAA ..((((..((((....)))).........))))......(((((--...((((((.............))))))...(((((.(......---).)-)))).))))).... ( -17.52) >consensus AAUCC__________AAAAUCAAGGGU___CGACCAAACUCUGUG_AACGGCAGGGGAAUCAACAAAAUCCCCAAA_A__AUAUGCAACACGAAAGUUUUUGCUC_CAACA .......................(((............((((((......)))))).............)))....................................... ( -7.08 = -7.69 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:32 2006