Locus 6522

Sequence ID 2L_DroMel_CAF1
Location 18,352,870 – 18,352,975
Length 105
Max. P 0.629233
window10407

overview

Window 7

Location 18,352,870 – 18,352,975
Length 105
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 84.72
Mean single sequence MFE -43.13
Consensus MFE -31.00
Energy contribution -34.33
Covariance contribution 3.33
Combinations/Pair 1.00
Mean z-score -1.96
Structure conservation index 0.72
SVM decision value 0.20
SVM RNA-class probability 0.629233
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18352870 105 - 22407834
GAAGGAAAGCCAGCUCCUGGAAAUCAAGGUCCUUCAAUUGA---------------GCCUAAGCUGGUCCCCCAACCCGGUUCACUGGACAAAUUGCCAUCAGGCGGAGGGCUAAUUGGC
((((((...((((...)))).........))))))......---------------(((.((..((((((.((...((((....)))).......(((....))))).)))))).))))) ( -34.00)
>DroSec_CAF1 196560 120 - 1
GAAGGAAAGCCAGCUCCUGGACCUCAAGGGGCUACACUUGAGAGCCAAGUGAAUCAGCCUAAGCUGGUGUCCCAACCCGGGUUACUGGCCAAAUUGCCAUCAGGCGGAGGGCUAAUUGGC
........((((((((((........))))))).((((((.....))))))(((.(((((..((..(((.(((.....))).)))..))....(((((....))))).))))).)))))) ( -47.30)
>DroSim_CAF1 204644 120 - 1
GAAGGAAAGCCAGCUCCUGGACCUCAAGGGGCUACACUUGAGAGCCAAGUGAAUCAGCCUAAGCUGGUGCCCCAACCCGGGUUACUGGGCAAAUUGCCAUCAGGCGGAGGGCUAAUCGGC
...((..((((..((((..........(((((..((((((.....)))))).((((((....)))))))))))..(((((....)))))......(((....)))))))))))..))... ( -48.10)
>consensus
GAAGGAAAGCCAGCUCCUGGACCUCAAGGGGCUACACUUGAGAGCCAAGUGAAUCAGCCUAAGCUGGUGCCCCAACCCGGGUUACUGGACAAAUUGCCAUCAGGCGGAGGGCUAAUUGGC
........((((((((((........))))))).((((((.....)))))).....((((..((..(((.(((.....))).)))..).)...(((((....))))).)))).....))) (-31.00 = -34.33 +   3.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:13 2006