Locus 6521

Sequence ID 2L_DroMel_CAF1
Location 18,352,722 – 18,352,833
Length 111
Max. P 0.788565
window10406

overview

Window 6

Location 18,352,722 – 18,352,833
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 73.27
Mean single sequence MFE -24.35
Consensus MFE -12.74
Energy contribution -15.93
Covariance contribution 3.19
Combinations/Pair 1.22
Mean z-score -1.98
Structure conservation index 0.52
SVM decision value 0.58
SVM RNA-class probability 0.788565
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18352722 111 + 22407834
GUUUUUUAAUAUCAUUUUGUCUACGCUGCAAAAGGCUCAAUAUAUUUUGAUGCUUUUUUAAUUCUUGCUGUAGACGAAACUGAUCUCGGUAAUCCGACAAAUCAUUGAAAU
...((((((((((((((((((((((..(((((((((((((......)))).)))))........))))))))))))))).)))).((((....))))......))))))). ( -29.00)
>DroSec_CAF1 196412 111 + 1
CUGUUUUAAGAUCAUUUUGUCUACGCUGCAAAAGGCUCAAUAAUUGUUGAUGCUUUCUUAAUUCUUGCUGUAGACGAAGCUGAUCUCGGUAAUUCGACAGUUCAUUGAUAU
((((((..(((((((((((((((((..((((((((((((((....))))).)))))........))))))))))))))).))))))..)......)))))........... ( -31.30)
>DroSim_CAF1 204496 111 + 1
CUGUUUUAAGAUCAUUUUGUCUACGCUGCAAAAGGCUCAAUAAUUGUUGAUGCUUUCUUAAUUCUUGUUGAAGACGAAGCUGAUCUCGGUAAUUCGACAGUUCAUUGAUAU
((((((..((((((((((((((..(((......)))(((((((..(((((.......)))))..))))))))))))))).))))))..)......)))))........... ( -26.80)
>DroEre_CAF1 197500 89 + 1
---------------------GAUUCUGCAAAAGGUUCAAUAAAUUUUGAUGUUUUU-UAAUGCUUGCUCAUUACGAACCUGAUUUUGAUCAACAACCAAUCUAUCGACAG
---------------------((((.......((((((...((((......))))..-(((((......))))).))))))......)))).................... ( -10.32)
>consensus
CUGUUUUAAGAUCAUUUUGUCUACGCUGCAAAAGGCUCAAUAAAUGUUGAUGCUUUCUUAAUUCUUGCUGAAGACGAAGCUGAUCUCGGUAAUCCGACAAUUCAUUGAUAU
.........(((((((((((((((...(((((((((((((......)))).)))))........)))).)))))))))).)))))((((....)))).............. (-12.74 = -15.93 +   3.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:12 2006