| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,352,452 – 18,352,572 |
| Length | 120 |
| Max. P | 0.575550 |
| Location | 18,352,452 – 18,352,572 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 97.22 |
| Mean single sequence MFE | -38.70 |
| Consensus MFE | -37.72 |
| Energy contribution | -37.83 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.97 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18352452 120 - 22407834 AGGGUCUUCAAGCUGGAUCCACUGGCCUGCAGACUAGUUCCCUACAAGGCACAGAAAGUUCUGCAUCUCAAAGCGCCGCUCUUCAGCGAUUGAAGGAGCAGGAACAACUGCGAAUUCAGA .((((((.......)))))).((((..(((((....(((((......(((..(((....)))((........)))))(((((((((...))))).)))).)))))..)))))...)))). ( -37.00) >DroSec_CAF1 196142 120 - 1 AGGGUCUUCAAGCUGGAUCCACUGGCUUGCAGACUAGUUCCCUACAAGGCACAGAUAGUUCUGCAUCUCAAAGCGCCGCUCUUCAGCGAUUGAAGGAGCAGGAGCAACUGCGCAUUCAAA ..(((((.(((((..(.....)..))))).))))).(((((......(((..(((....)))((........)))))(((((((((...))))).)))).)))))............... ( -39.10) >DroSim_CAF1 204226 120 - 1 AGGGUCUUCAAGCUGGAUCCACUGGCUUGCAGACUAGUUCCCUACAAGGCACAGAUAGUUCUGCAUCUCAAAGCGCCGCUCUUCAGCGAUUGAAGGAGCAGGAGCAACUGCGCAUUCAGA ..(((((.(((((..(.....)..))))).))))).(((((......(((..(((....)))((........)))))(((((((((...))))).)))).)))))..(((......))). ( -40.00) >consensus AGGGUCUUCAAGCUGGAUCCACUGGCUUGCAGACUAGUUCCCUACAAGGCACAGAUAGUUCUGCAUCUCAAAGCGCCGCUCUUCAGCGAUUGAAGGAGCAGGAGCAACUGCGCAUUCAGA ..(((((.(((((..(.....)..))))).))))).(((((......(((..(((....)))((........)))))(((((((((...))))).)))).)))))............... (-37.72 = -37.83 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:11 2006