Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,350,531 – 18,350,623 |
Length | 92 |
Max. P | 0.612524 |
Location | 18,350,531 – 18,350,623 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 83.57 |
Mean single sequence MFE | -10.86 |
Consensus MFE | -8.56 |
Energy contribution | -8.56 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.18 |
Mean z-score | -1.64 |
Structure conservation index | 0.79 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612524 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18350531 92 - 22407834 C-------CUUUUUGUUUCG-CUUUUUUAGCUUCGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUU------U .-------...........(-((.....))).......(((((((((((.................................)))))))))))......------. ( -11.81) >DroSim_CAF1 202272 92 - 1 C-------CUUUUUGUUUCG-CUUUUUUAGCUUCGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUU------U .-------...........(-((.....))).......(((((((((((.................................)))))))))))......------. ( -11.81) >DroEre_CAF1 195636 104 - 1 CCGUUUCGCUUUUUGUUUCG-CUU-UUUAGCUUUGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUUCCCUUUU ...................(-((.-...))).......(((((((((((.................................)))))))))))............. ( -11.81) >DroYak_CAF1 205397 93 - 1 C-------CUUUUUGUUUCG-CUU-UUUAGCUUUGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUU----UUC .-------...........(-((.-...))).......(((((((((((.................................)))))))))))......----... ( -11.81) >DroAna_CAF1 177793 91 - 1 U-------CUCUUUGUUUCG-CAUUUUUAGC-UCGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCACAUUAAUUUCAUUUAUUUGCCGUAAUUUUUU------U .-------...........(-(.......))-......(((((((((((.................................)))))))))))......------. ( -12.31) >DroPer_CAF1 235263 83 - 1 C-------CCUGUUGUUUUUCCU--------UUUGGUUUUAUGGCAAAU-UCAUUUCAAUAAAAGUCACAUUAAUUUCAUUUAUUUUCCAUUUCUUUUG------- .-------..(((..(....((.--------...))....)..)))...-.................................................------- ( -5.60) >consensus C_______CUUUUUGUUUCG_CUU_UUUAGCUUCGUUUUUACGGCAAAUUUCAUUUCAAUAAAAGUCGCAUUAAUUUCAUUUAUUUGCUGUAAUUUUUU______U ......................................(((((((((((.................................)))))))))))............. ( -8.56 = -8.56 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:10 2006