| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,347,532 – 18,347,628 |
| Length | 96 |
| Max. P | 0.993164 |
| Location | 18,347,532 – 18,347,628 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 76.27 |
| Mean single sequence MFE | -18.73 |
| Consensus MFE | -11.64 |
| Energy contribution | -12.58 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.47 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.38 |
| SVM RNA-class probability | 0.993164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18347532 96 - 22407834 AAACAAUGCGCAGACCACUACCC--CAACCCAUCUCUCUCAACCACGCCCCCUAAUGGCUGGGCCAUAAAAAGCUCAUCAACGUCAUCUUCG-CAUUGU ..((((((((.(((..((.....--.....................(((.......)))(((((........))))).....))..))).))-)))))) ( -21.80) >DroEre_CAF1 192553 90 - 1 AAACAAUGCACAGACCCAUC--------CCCGCCCCCCUAAACCACGCCCUCUAAUGGCUGGGCCAUAAAAAGCUCAUCAACGUCAUCUUCG-CAUUGU ..(((((((..(((......--------..................(((.......)))(((((........))))).........)))..)-)))))) ( -17.20) >DroWil_CAF1 260125 76 - 1 AGACAAUGCA--AGCC-AUG--------------------CGCCACGCCCCCUAAUGGCCCGGCCAUAAAAAGCUCAUCAACGUCAUCUUGGUUGUUGU .((((((.((--((..-(((--------------------.(((..(((.......)))..)))))).....((........))...)))))))))).. ( -15.00) >DroYak_CAF1 202368 95 - 1 AAACAAUGCGCAGACCCCUCCGCCC---CCCACCCCCUUCAACCACGCCCCCUAAUGGCUGGGCCAUAAAAAGCUCAUCAACGUCAUCUUCG-CAUUGU ..((((((((.(((...........---..................(((.......)))(((((........))))).........))).))-)))))) ( -20.90) >consensus AAACAAUGCACAGACCCAUC________CCCACCCCCCUCAACCACGCCCCCUAAUGGCUGGGCCAUAAAAAGCUCAUCAACGUCAUCUUCG_CAUUGU ..((((((((.(((................................(((.......)))(((((........))))).........))).)).)))))) (-11.64 = -12.58 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:09 2006