| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,322,162 – 18,322,257 |
| Length | 95 |
| Max. P | 0.616069 |
| Location | 18,322,162 – 18,322,257 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 77.85 |
| Mean single sequence MFE | -34.00 |
| Consensus MFE | -19.63 |
| Energy contribution | -18.75 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.62 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.616069 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18322162 95 + 22407834 G----UCAGGCUGACUGACUUAUUGCCUGGGUUUUGGUAGGGGGCUUUGGGUUUUUGGCAUUGCGUCGGUA--UGAGGUUGUGUGCUAGCCCCCGAAAGUG (----((((.....)))))....((((........))))(((((((..........(((((.((.((....--.)).))...))))))))))))....... ( -32.90) >DroSec_CAF1 165890 94 + 1 G----UCAGGCUGACUGACUUAUUGCCUGGGUUUUGGUAGGGGGCUUUGGGUUUUUGGCUUUACGCUGGUA--UAAGGCUGCAUGCCAGCCCC-GAAAGUG (----((((.....)))))...(((((........)))))((((((...(((...((((((((........--))))))))...)))))))))-....... ( -32.30) >DroSim_CAF1 174393 93 + 1 G----UCAGGCUGACUGACUUAUUGCCCGGGUUUUGGUAGGGGGCUUUGGGUUUUUGGCUUUACGCUGGUA--UGAGGCUGCAUGCCAGCCCC--AAAGUG (----((((.....)))))......(((...........))).((((((((.....(......)(((((((--((......))))))))))))--))))). ( -35.80) >DroEre_CAF1 167414 94 + 1 G----UCAGGCUGACUGACUUAUUGCCUGCAAUUUGGUAGGCGGCUUCGGGUUUUCGGCUUUUAGCUGGUA--UGAGGCUUCGUGCUAAGCCC-GAAAGUG (----((((.....)))))....(((((((......)))))))(((((((((((.((((.....))))(((--((......))))).))))))-).)))). ( -38.50) >DroYak_CAF1 177257 93 + 1 U----UCAGGCAGGCUGACUUAUUGC-UGCGUUUGGGUAGGUGGCUUCGGGUUUUUGGCCUUUCGCUGGUA--UGAGGCUUCGUGCUAACCCC-GAAUGUG .----...(((((.........))))-)(((((((((....((((..((((((((..(((.......))).--.))))).))).))))..)))-)))))). ( -28.10) >DroAna_CAF1 150559 100 + 1 GAGGCUCAGCUGGACUGACUUAUUGGCCCAGUAUUGGUUUUCGGGGUGGUGCCUUGGGCUUUUAGUUGGUGGGCGGGGCUCAGUGCUGACCCC-GAAAGUG ...(((..(((((.(..(....)..).)))))...)))(((((((((.(.((.((((((((...((......)).)))))))).))).)))))-))))... ( -36.40) >consensus G____UCAGGCUGACUGACUUAUUGCCUGGGUUUUGGUAGGGGGCUUUGGGUUUUUGGCUUUUCGCUGGUA__UGAGGCUGCGUGCUAACCCC_GAAAGUG ......(((((.............)))))....((((((.(.(((((((.....(((((.....)))))....))))))).).))))))............ (-19.63 = -18.75 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:13:00 2006