Locus 6513

Sequence ID 2L_DroMel_CAF1
Location 18,319,387 – 18,319,481
Length 94
Max. P 0.665187
window10392

overview

Window 2

Location 18,319,387 – 18,319,481
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 81.42
Mean single sequence MFE -23.98
Consensus MFE -13.94
Energy contribution -14.67
Covariance contribution 0.73
Combinations/Pair 1.21
Mean z-score -2.15
Structure conservation index 0.58
SVM decision value 0.28
SVM RNA-class probability 0.665187
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18319387 94 - 22407834
AGCAAUUAACCGAUUCUUCCUUCCGCACCUUCGAGCGGGGAAAACUCCCGCUUUUCAUUUGGGGAAUACCUUUUGGUAAACUAAAGCCCCCAGC
.((.................((((.((.....((((((((.....))))))))......)).))))((((....)))).......))....... ( -23.80)
>DroSec_CAF1 163125 94 - 1
AGCAAUUAACCGACUCUUCCUUCCGCACCUUCGAGCGGGGAAAACUCCCGCUUUUCAUUUGGGGAAUACCUUUUGGUAAACUAAAGCCCCCAGC
.((.................((((.((.....((((((((.....))))))))......)).))))((((....)))).......))....... ( -23.80)
>DroSim_CAF1 171643 94 - 1
AGCAAUUAACCGACUCUUCCUUCCGCACCUUCGUGCGGGGAAAACUCCCGCUUUUCAUUUGGGGAAUACCUUUUGGUAAACUAAAGCCCCCAGC
(((....................(((((....)))))((((....)))))))......((((((..((((....))))..(....).)))))). ( -25.50)
>DroEre_CAF1 164713 94 - 1
AGCAAUUAACCGGCUCUUCCUUCCGCAGCUCCAAGCGGGGAAAACUCCCGCUUUUCAUUUGGGGAAUACCUUUUGGUAAACUAAAGCCCCCAGC
...........((((.....((((.(((....((((((((.....)))))))).....))).))))((((....))))......))))...... ( -27.70)
>DroYak_CAF1 174493 94 - 1
AGCAAUUAACCGACUCUUCCUUCCGCAGCUUCAAGCGGGGAAAACUCCCGCUUUUCAUUGGGGAAAAACCUUUUGGUAAACUAAAGCACCCAGC
.((.................((((.(((....((((((((.....))))))))....))).))))..(((....)))........))....... ( -24.50)
>DroAna_CAF1 148495 76 - 1
AGCGAUU------------------CACCUUCAAAAUGCUGCAACUUUGGCUUUUCAUUAAGGAAAUAACUCCCGAAAAGCCAAAGCCCCUGGC
.......------------------............(((....((((((((((((.....(((......))).)))))))))))).....))) ( -18.60)
>consensus
AGCAAUUAACCGACUCUUCCUUCCGCACCUUCAAGCGGGGAAAACUCCCGCUUUUCAUUUGGGGAAUACCUUUUGGUAAACUAAAGCCCCCAGC
.((.............................((((((((.....)))))))).......((((..((((....))))..(....).)))).)) (-13.94 = -14.67 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:59 2006