Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,318,338 – 18,318,449 |
Length | 111 |
Max. P | 0.792149 |
Location | 18,318,338 – 18,318,449 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 81.10 |
Mean single sequence MFE | -27.16 |
Consensus MFE | -20.40 |
Energy contribution | -21.20 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.11 |
Mean z-score | -1.77 |
Structure conservation index | 0.75 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.792149 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18318338 111 - 22407834 CCC-AUAGA-----AUAUUGUUAAAUACUAUUGAGACUCUUGUCCUUUUUUGCACGCUUAAGCGUAUCCUUUGGGUCGGAUAGUUAAAUUUCCGGCCCAUGCCCGUCUGAAAAAACG ...-.....-----................((.((((................((((....))))......(((((((((..........))))))))).....)))).))...... ( -25.80) >DroSec_CAF1 162084 111 - 1 CGC-AUAAA-----AUAUUGUUAAAUACUAUAGAGACUCUUGGCCUUUUUUGUACGCUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUGCCCGUCUGAAAAAACG ...-.....-----...................((((....(((.......((((((....))))))....(((((((((..........))))))))).))).))))......... ( -29.20) >DroSim_CAF1 170598 111 - 1 CGC-AUAAA-----AUAUUGUUAAAUACUAUAGAGACUCUUGGCCUUUUUUGUACGCUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUGCCCGUCUGAAAAAACG ...-.....-----...................((((....(((.......((((((....))))))....(((((((((..........))))))))).))).))))......... ( -29.20) >DroEre_CAF1 163731 115 - 1 CCC-AUAAAGUAAUAUGUUGCUUAAUAGUAUACAGACACUUCCCCUUUU-UUUACGUUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUACCCAUCUGAAAAAAUG ...-...((((((....)))))).........((((.............-..(((((....))))).....(((((((((..........)))))))))......))))........ ( -26.20) >DroYak_CAF1 173460 99 - 1 CCCUAUAAAACCAUAUAUGGUUUAAUAAU-----------------UUG-AUUAUGUUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUACCCAUCGGAAAAAAUG ...(((.((((((....)))))).))).(-----------------(((-(((((((....))))).....(((((((((..........))))))))).....))))))....... ( -25.40) >consensus CCC_AUAAA_____AUAUUGUUAAAUACUAUAGAGACUCUUGGCCUUUUUUGUACGCUUAAGCGUAUCCUUUGGGUCGGAUAGUUGAAUUUCCGGCCCAUGCCCGUCUGAAAAAACG .................................((((...............(((((....))))).....(((((((((..........))))))))).....))))......... (-20.40 = -21.20 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:58 2006