Locus 6510

Sequence ID 2L_DroMel_CAF1
Location 18,302,223 – 18,302,342
Length 119
Max. P 0.605441
window10388

overview

Window 8

Location 18,302,223 – 18,302,342
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.98
Mean single sequence MFE -39.14
Consensus MFE -31.86
Energy contribution -32.26
Covariance contribution 0.40
Combinations/Pair 1.12
Mean z-score -1.41
Structure conservation index 0.81
SVM decision value 0.15
SVM RNA-class probability 0.605441
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18302223 119 - 22407834
CUAAAUUGGAGUGUUAAGGCGGCUAAGGCGAGGGGUUAAGUUCCAAUUGUGGGCUGGGUAAUGGCCAGCAAUGAUUCAGCCGCUUAAGAGGUCACAGGGCUUCUCUCAGAGCUUUAGUU-
...(((((((((....((((((((...((((..((.......))..))))..(((((.......)))))........)))))))).(((((((....)))))))......)))))))))- ( -39.60)
>DroSec_CAF1 146138 119 - 1
CUAAAUUGGAGUGUUAAGGCGGCUAAGGCGAGGGGUUAAGGUCCAAUUGUGGGCUGGGUAAUGGCCAGUAAUGAGUCAGCCGCUUAAGAGGUCACAGGGCUUCACUUAGAGCUUUAGUU-
...(((((((((.(((((((((((..........((((.((((((....))))))...))))(((((....)).)))))))))....((((((....)))))).))))).)))))))))- ( -41.80)
>DroSim_CAF1 153865 119 - 1
CUAAAUUGGAGUGUUAAGGCGGCUAAGGCGAGGGGUUAAGGUCCAAUUGUGGGCUGGGUAAUGGCCAGUAAUGAGUCAGCCGCUUAAGAGGUCACAGGGCUUCACUCAGAGCUUUAGUU-
...(((((((((....((((((((..........((((.((((((....))))))...))))(((((....)).)))))))))))..((((((....)))))).......)))))))))- ( -39.30)
>DroEre_CAF1 147477 118 - 1
CUAAAUUGGAGUGUUAAGGCGGUUAAGGCGAGGGGUUAAGGUCCA-UUGGGGGCUGGGUAAUGGCCA-CAAUGAUUCAGCGGCUUAAGUGGCCACCGGGCUUCUCUCAGAGCUUUGGUUG
...(((..((((......((.......))((((((....(((((.-......(((((((..((....-))...)))))))((((.....))))...)))))))))))...))))..))). ( -37.10)
>DroYak_CAF1 156710 120 - 1
CUAAAUUGGAGUGUUAAGGCGGUUUAAGCGAGGGGUUAAGGUCCAAUUGGGGGCUGGGUAAUGGCCAGCAAUGAGUCAGCCGCUUAAGUGGUCACCGGGCUUCUCUCAGAGCUUUAGUUG
...(((((((((......((.......))((((((......(((....)))((((.(((..((((((....)).))))(((((....))))).))).))))))))))...))))))))). ( -37.90)
>consensus
CUAAAUUGGAGUGUUAAGGCGGCUAAGGCGAGGGGUUAAGGUCCAAUUGUGGGCUGGGUAAUGGCCAGCAAUGAGUCAGCCGCUUAAGAGGUCACAGGGCUUCUCUCAGAGCUUUAGUU_
...(((((((((....((((((((...((((..((.......))..))))..(((((.......)))))........))))))))..((((((....)))))).......))))))))). (-31.86 = -32.26 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:55 2006