Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,951,510 – 1,951,670 |
Length | 160 |
Max. P | 0.983417 |
Location | 1,951,510 – 1,951,630 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -47.58 |
Consensus MFE | -47.62 |
Energy contribution | -47.38 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.10 |
Mean z-score | -2.57 |
Structure conservation index | 1.00 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983417 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1951510 120 + 22407834 GGCAGGUGUAGGGCUUCUUGUCGUUGUGCGUGUGCAUGUGGAAGGUGAGGUUGUAGACCUGGUGGAAGGCCUUGUUGCAGAUGUUGCACUUGUAGGCCUUUUCGCCGCUGUGGGUCAGCU ...((((.((.((((((...((..(((((....)))))..))....)))))).)).))))((((((((((((...(((((...))))).....))))).)))))))((((.....)))). ( -45.50) >DroEre_CAF1 3159 120 + 1 GGCAGGUGUAGGGCUUCUUGUCGUUGUGCGUGUGCAUGUGGAAGGUGAGGUUGUACACCUGGUGGAAGGCCUUGUUGCAGAUGUUGCACUUGUAGGCCUUUUCGCCGCUGUGGGUCAGCU ...(((((((.((((((...((..(((((....)))))..))....)))))).)))))))((((((((((((...(((((...))))).....))))).)))))))((((.....)))). ( -49.40) >DroYak_CAF1 731 120 + 1 GACAGGUGUAGGGCUUCUUGUCGUUGUGCGUGUGCAUGUGGAAGGUGAGGUUGUACACCUGGUGGAAGGCCUUGUUGCAGAUGUUGCACUUGUAGGCCUUUUCGCCGCUGUGGGUCAGCU ...(((((((.((((((...((..(((((....)))))..))....)))))).)))))))((((((((((((...(((((...))))).....))))).)))))))((((.....)))). ( -49.40) >DroAna_CAF1 23328 120 + 1 GGCAGGUGUAGGGCUUUUUGUCGUUGUGCGUGUGCAUGUGGAAGGUGAGGUUGUAGAUCUGGUGGAAGGCCUUGUUGCAGAUGCUGCACUUAUAGGCCUUCUCGCCGCUGUGGGUCAGCU ...((((.((.((((((...((..(((((....)))))..))....)))))).)).))))((((((((((((...(((((...))))).....)))))))).))))((((.....)))). ( -46.00) >consensus GGCAGGUGUAGGGCUUCUUGUCGUUGUGCGUGUGCAUGUGGAAGGUGAGGUUGUACACCUGGUGGAAGGCCUUGUUGCAGAUGUUGCACUUGUAGGCCUUUUCGCCGCUGUGGGUCAGCU ...(((((((.((((((...((..(((((....)))))..))....)))))).)))))))((((((((((((...(((((...))))).....)))))))).))))((((.....)))). (-47.62 = -47.38 + -0.25)
Location | 1,951,510 – 1,951,630 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -27.75 |
Energy contribution | -28.50 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -3.05 |
Structure conservation index | 0.89 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942138 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1951510 120 - 22407834 AGCUGACCCACAGCGGCGAAAAGGCCUACAAGUGCAACAUCUGCAACAAGGCCUUCCACCAGGUCUACAACCUCACCUUCCACAUGCACACGCACAACGACAAGAAGCCCUACACCUGCC .((((.....))))(((((((((((((.....((((.....))))...))))))).....((((.....))))....)))....(((....)))............)))........... ( -28.00) >DroEre_CAF1 3159 120 - 1 AGCUGACCCACAGCGGCGAAAAGGCCUACAAGUGCAACAUCUGCAACAAGGCCUUCCACCAGGUGUACAACCUCACCUUCCACAUGCACACGCACAACGACAAGAAGCCCUACACCUGCC .((((.....))))(((...(((((((.....((((.....))))...))))))).....(((((((...(.((....((....(((....)))....))...)).)...)))))))))) ( -32.70) >DroYak_CAF1 731 120 - 1 AGCUGACCCACAGCGGCGAAAAGGCCUACAAGUGCAACAUCUGCAACAAGGCCUUCCACCAGGUGUACAACCUCACCUUCCACAUGCACACGCACAACGACAAGAAGCCCUACACCUGUC .((((.....))))((....(((((((.....((((.....))))...)))))))))..((((((((...(.((....((....(((....)))....))...)).)...)))))))).. ( -32.40) >DroAna_CAF1 23328 120 - 1 AGCUGACCCACAGCGGCGAGAAGGCCUAUAAGUGCAGCAUCUGCAACAAGGCCUUCCACCAGAUCUACAACCUCACCUUCCACAUGCACACGCACAACGACAAAAAGCCCUACACCUGCC .((((.....))))((((.((((((((.....(((((...)))))...)))))))))...........................(((....)))............)))........... ( -31.20) >consensus AGCUGACCCACAGCGGCGAAAAGGCCUACAAGUGCAACAUCUGCAACAAGGCCUUCCACCAGGUCUACAACCUCACCUUCCACAUGCACACGCACAACGACAAGAAGCCCUACACCUGCC .((((.....))))((....(((((((.....((((.....))))...)))))))))..((((((((....((.....((....(((....)))....)).....))...)))))))).. (-27.75 = -28.50 + 0.75)
Location | 1,951,550 – 1,951,670 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -44.50 |
Consensus MFE | -43.54 |
Energy contribution | -43.47 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.09 |
Mean z-score | -1.43 |
Structure conservation index | 0.98 |
SVM decision value | -0.05 |
SVM RNA-class probability | 0.507426 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1951550 120 + 22407834 GAAGGUGAGGUUGUAGACCUGGUGGAAGGCCUUGUUGCAGAUGUUGCACUUGUAGGCCUUUUCGCCGCUGUGGGUCAGCUUGUGGUUCUUGUAGUUGCCCUUCUGGUGGAACCCCUUGCC ...((..(((..((.(((((((((((((((((...(((((...))))).....))))).))))))).....))))).))....((((((..(((........)))..)))))))))..)) ( -45.00) >DroEre_CAF1 3199 120 + 1 GAAGGUGAGGUUGUACACCUGGUGGAAGGCCUUGUUGCAGAUGUUGCACUUGUAGGCCUUUUCGCCGCUGUGGGUCAGCUUGUGGUUCUUGUAGUUGCCCUUCUGGUGGAACCCCUUGCC ...((..(((.....((((.((((((((((((...(((((...))))).....))))).))))))).....(((.(((((............))))))))....)))).....)))..)) ( -45.40) >DroYak_CAF1 771 120 + 1 GAAGGUGAGGUUGUACACCUGGUGGAAGGCCUUGUUGCAGAUGUUGCACUUGUAGGCCUUUUCGCCGCUGUGGGUCAGCUUGUGGUUCUUGUAGUUGCCCUUCUGGUGGAACCCCUUGCC ...((..(((.....((((.((((((((((((...(((((...))))).....))))).))))))).....(((.(((((............))))))))....)))).....)))..)) ( -45.40) >DroAna_CAF1 23368 120 + 1 GAAGGUGAGGUUGUAGAUCUGGUGGAAGGCCUUGUUGCAGAUGCUGCACUUAUAGGCCUUCUCGCCGCUGUGGGUCAGCUUGUGGUUCUUGUAGUUGCCCUUCUGGUGGAAGCCCUUUCC (((((..((.(...(((.((((((((((((((...(((((...))))).....)))))))).))))((((.....))))....)).)))...).))..))))).(((....)))...... ( -42.20) >consensus GAAGGUGAGGUUGUACACCUGGUGGAAGGCCUUGUUGCAGAUGUUGCACUUGUAGGCCUUUUCGCCGCUGUGGGUCAGCUUGUGGUUCUUGUAGUUGCCCUUCUGGUGGAACCCCUUGCC ...((..(((.....((((.((((((((((((...(((((...))))).....)))))))).)))).....(((.(((((............))))))))....)))).....)))..)) (-43.54 = -43.47 + -0.06)
Location | 1,951,550 – 1,951,670 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.94 |
Mean single sequence MFE | -36.44 |
Consensus MFE | -31.45 |
Energy contribution | -31.70 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.72 |
Structure conservation index | 0.86 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.876116 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1951550 120 - 22407834 GGCAAGGGGUUCCACCAGAAGGGCAACUACAAGAACCACAAGCUGACCCACAGCGGCGAAAAGGCCUACAAGUGCAACAUCUGCAACAAGGCCUUCCACCAGGUCUACAACCUCACCUUC ((..(((((((((........)).))))...(((.((....((((.....))))((.(..(((((((.....((((.....))))...))))))).).)).)))))....)))..))... ( -34.80) >DroEre_CAF1 3199 120 - 1 GGCAAGGGGUUCCACCAGAAGGGCAACUACAAGAACCACAAGCUGACCCACAGCGGCGAAAAGGCCUACAAGUGCAACAUCUGCAACAAGGCCUUCCACCAGGUGUACAACCUCACCUUC .....((((((.((((....((....)).............((((.....))))((.(..(((((((.....((((.....))))...))))))).).)).))))...))))))...... ( -36.50) >DroYak_CAF1 771 120 - 1 GGCAAGGGGUUCCACCAGAAGGGCAACUACAAGAACCACAAGCUGACCCACAGCGGCGAAAAGGCCUACAAGUGCAACAUCUGCAACAAGGCCUUCCACCAGGUGUACAACCUCACCUUC .....((((((.((((....((....)).............((((.....))))((.(..(((((((.....((((.....))))...))))))).).)).))))...))))))...... ( -36.50) >DroAna_CAF1 23368 120 - 1 GGAAAGGGCUUCCACCAGAAGGGCAACUACAAGAACCACAAGCUGACCCACAGCGGCGAGAAGGCCUAUAAGUGCAGCAUCUGCAACAAGGCCUUCCACCAGAUCUACAACCUCACCUUC ((((.....))))....(((((.........(((.......((((.....))))((.(.((((((((.....(((((...)))))...))))))))).))...))).........))))) ( -37.97) >consensus GGCAAGGGGUUCCACCAGAAGGGCAACUACAAGAACCACAAGCUGACCCACAGCGGCGAAAAGGCCUACAAGUGCAACAUCUGCAACAAGGCCUUCCACCAGGUCUACAACCUCACCUUC ((..((((((((........((....))....)))))....((((.....))))((.(..(((((((.....((((.....))))...))))))).).))..........)))..))... (-31.45 = -31.70 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:59 2006