Locus 6508

Sequence ID 2L_DroMel_CAF1
Location 18,300,765 – 18,300,874
Length 109
Max. P 0.964212
window10385

overview

Window 5

Location 18,300,765 – 18,300,874
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 93.92
Mean single sequence MFE -25.40
Consensus MFE -24.74
Energy contribution -24.62
Covariance contribution -0.12
Combinations/Pair 1.07
Mean z-score -1.39
Structure conservation index 0.97
SVM decision value 1.56
SVM RNA-class probability 0.964212
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18300765 109 - 22407834
CCGUAACCGUCCCCUUCCCACUAUAUCUCCCUGGAUUUCAAUGUCCAACAGUCCGUAACCAAACAGAUGAGCAAACGGACAACCGUAAAAGUGUUGCCGUUGCCAUGGA
((((...((((....................(((((......))))).......((......)).)))).((((.(((.(((((......).))))))))))).)))). ( -23.00)
>DroSec_CAF1 144707 109 - 1
CCAUAACCGUGCCCUUCCCACUAUAUCUCCCUGGAUUUCAAUGUCCAACAGUCCGUAACCAAACAGAUGAGCAAACGGACAACCGUAAAAGUGUUGCCGUUGCCAUGGA
......(((((............(((((...(((((......))))).......((......))))))).((((.(((.(((((......).)))))))))))))))). ( -25.30)
>DroSim_CAF1 152417 109 - 1
CCAUAACCGUGCCCUUCCCACUAUAUCUCCCUGGAUUUCAAUGUCCAACAGUCCGUAACCAAACAGAUGAGCAAACGGACAACCGUAAAAGUGUUGCCGUUGCCAUGGA
......(((((............(((((...(((((......))))).......((......))))))).((((.(((.(((((......).)))))))))))))))). ( -25.30)
>DroEre_CAF1 145987 104 - 1
-----CCCAUGCCCUUUCUACUAUAUCUCCCUGGAUUUCACUGUCCAACAGUCCGUAACCAAACAGAUGAGCGAACGGACAACCGUAAAAGUGUUGCCGUUGCCAUGGA
-----.(((((............(((((...(((.....((((.....))))......)))...))))).((.(((((.(((((......).)))))))))))))))). ( -26.80)
>DroYak_CAF1 155229 104 - 1
-----ACCGUGCCCUUUCUACUAUAUCUCCCUGGAUUUCACUGUCCAACAGUCCGUAACCAAACAGAUGAGCAAACGGACAACCGUAAAAGUGUUGCCGUUGCCAUGGA
-----.(((((............(((((...(((.....((((.....))))......)))...))))).((((.(((.(((((......).)))))))))))))))). ( -26.60)
>consensus
CC_UAACCGUGCCCUUCCCACUAUAUCUCCCUGGAUUUCAAUGUCCAACAGUCCGUAACCAAACAGAUGAGCAAACGGACAACCGUAAAAGUGUUGCCGUUGCCAUGGA
......(((((............(((((...(((((......))))).......((......))))))).((((.(((.(((((......).)))))))))))))))). (-24.74 = -24.62 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:52 2006