Locus 6507

Sequence ID 2L_DroMel_CAF1
Location 18,294,721 – 18,294,824
Length 103
Max. P 0.500000
window10384

overview

Window 4

Location 18,294,721 – 18,294,824
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 97.38
Mean single sequence MFE -21.72
Consensus MFE -20.11
Energy contribution -19.95
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -1.15
Structure conservation index 0.93
SVM decision value -0.08
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18294721 103 + 22407834
UUUUUCUGUGCAUUAUCGCACUCAAAGAUACACCUCACACGCCACGCAGACAAACACUGAGCCCCAGCUCCCCGCGGAGCCAUAAACAUUUCUAGUGCUGCAC
(((((..((((......))))..))))).................((((.....(((((((.....(((((....))))).........))).)))))))).. ( -20.64)
>DroSec_CAF1 138530 103 + 1
UCUCUCUGUGCAUUAUCGCACUCAAGGAUACACCUCACACGCCACGCAGGCAAACACUGAGCCCCAGCUCCCCGCGGAGCCAUAAACAUUUCUAGUGCUGCAC
.......(((((.....(((((..((((.....((((...(((.....)))......)))).....(((((....))))).........)))))))))))))) ( -24.70)
>DroSim_CAF1 145785 103 + 1
UCUCUCUGUGCAUUAUCGCACUCAAGGAUACACCUCACACGCCACGCAGACAAACACUGAGCCCCAGCUCCCCGCGGAGCCAUAAACAUUUCUAGUGCUGCAC
.......(((((.....(((((..(((.....))).....((..(((((.......))((((....))))...)))..)).............)))))))))) ( -21.40)
>DroEre_CAF1 139686 103 + 1
UCUCCCUGUGCAUUAUCGCACUCAAGGAUACACCUCACACGCCACGCAGACAAACACUGAGCCCCAGCUCCCCGCGGAGCCAUAAACAUUUCUAGUGCUGCAC
..(((..((((......))))....))).................((((.....(((((((.....(((((....))))).........))).)))))))).. ( -21.64)
>DroYak_CAF1 149208 103 + 1
UCUCGCUGUGCAUUAUCGCACUCAAGGAUACACCUCACACGCCACGCCGACAAACACUGAGCCCCAGCUCCCCGCGGAGCCAUAAACAUUUCUAGUGCUGCAC
.......(((((.....(((((..(((.....))).....((..(((.(.....)...((((....))))...)))..)).............)))))))))) ( -20.20)
>consensus
UCUCUCUGUGCAUUAUCGCACUCAAGGAUACACCUCACACGCCACGCAGACAAACACUGAGCCCCAGCUCCCCGCGGAGCCAUAAACAUUUCUAGUGCUGCAC
.......(((((.....(((((...(((............((..(((.(.....)...((((....))))...)))..))..........))))))))))))) (-20.11 = -19.95 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:51 2006