Locus 6506

Sequence ID 2L_DroMel_CAF1
Location 18,291,461 – 18,291,581
Length 120
Max. P 0.881758
window10383

overview

Window 3

Location 18,291,461 – 18,291,581
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.17
Mean single sequence MFE -48.79
Consensus MFE -27.91
Energy contribution -29.22
Covariance contribution 1.31
Combinations/Pair 1.23
Mean z-score -2.24
Structure conservation index 0.57
SVM decision value 0.92
SVM RNA-class probability 0.881758
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18291461 120 + 22407834
GAGGCCCUAAAAGAAUUGCAGGAGAGCAUUCCGGAAAUCAACAAAAUCUUCGAUGUGCACUGUCGCAUCGGCAGUGGAACCUUCAGCACAGUUCUCUUGGGAACCCUGCAGCGGGAAAGG
.....(((.......((.(((((((((....((((.............)))).((((((((((((...))))))).((....)).)))))))))))))).)).(((......)))..))) ( -35.22)
>DroVir_CAF1 213036 120 + 1
GAGGCGCUGCAGGAGCUCCAGACAUCCAUACCGGAGAUAACGAAAAUCUUCGAUGUCCAUUGCCGCAUCGGUAGCGGCACCUUCAGCACUGUGCUGCUGGGCACACUGCAGCGGGAACGC
((((.(((((.(((.(....)...))).((((((((((.......))))))(((((........)))))))))))))).))))..(((.((((((....)))))).))).(((....))) ( -47.80)
>DroPse_CAF1 157465 120 + 1
GACGCCCUGCGGGAGCUGCAGAAGAGCAUACCGGAGAUCAGCAAGAUCUUCGACGUGCACUGCCGCAUCGGCAGCGGCACCUUCAGCAGCGUCCUGCUGGGCACCCUGCAGCGGGAGCGC
...((((.(((((((((((.((((.((((..((((((((.....))))))))..))))..((((((.......)))))).)))).))))).)))))).)))).(((......)))..... ( -65.20)
>DroWil_CAF1 188938 120 + 1
GAGGCCCUAAGGGAACUGCAAGAGACUAUUCCGGAGAUAAGUAAAAUUUUUGAUGUCCAGUUUCGCAUUGGCAGUGGCACAUUCAGCACUGUCCUCUUGGGAACCCUUCAGCGAGAGCGU
((((.((((((((...(((..((((((((..(((((((.......)))))))..))..)))))))))..(((((((.(.......))))))))))))))))...))))..((....)).. ( -34.70)
>DroMoj_CAF1 224045 120 + 1
GAGGCACUGCAGGAGCUGCAGACAUCCAUACCGGAGAUCUCGAAAAUCUUCGAUGUGCACUGCCGCAUCGGCAGCGGCACCUUCUCCACGGUGCUGCUGGGCACACUGCAGCGCGAACGC
...((.((((((((((.((((.....((((.(((((((.......))))))).))))..)))).)).))..((((((((((........))))))))))......)))))).))...... ( -51.70)
>DroAna_CAF1 125473 120 + 1
GAGGCCCUCAAGGAGCUGCAGGAGAGCAUUCCGGAGAUAAGCAAGAUCUUCGAUGUGCACUGCCGCAUCGGAAGCGGCACCUUUAGCACCGUGCUGCUGGGUACCCUGCAGCGCGAGAGG
.....((((..((.((((.(((...((((..(((((((.......)))))))..))))..((((((.......))))))))).)))).))(((((((.((....)).)))))))..)))) ( -58.10)
>consensus
GAGGCCCUGAAGGAGCUGCAGAAGACCAUACCGGAGAUAAGCAAAAUCUUCGAUGUGCACUGCCGCAUCGGCAGCGGCACCUUCAGCACCGUGCUGCUGGGCACCCUGCAGCGGGAACGC
..............(((((((.........((((((((.......))))))((((((......))))))))(((((((((..........)))))))))......)))))))........ (-27.91 = -29.22 +   1.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:50 2006