Locus 6504

Sequence ID 2L_DroMel_CAF1
Location 18,285,385 – 18,285,482
Length 97
Max. P 0.699675
window10380

overview

Window 0

Location 18,285,385 – 18,285,482
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 94.64
Mean single sequence MFE -31.06
Consensus MFE -26.16
Energy contribution -26.52
Covariance contribution 0.36
Combinations/Pair 1.10
Mean z-score -1.42
Structure conservation index 0.84
SVM decision value 0.35
SVM RNA-class probability 0.699675
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18285385 97 + 22407834
CUUCAAAGGUGGCACGAAGGUUGCAGGAACUGCUUGUAAGGACCUAGUCGAAGGAGAGCGCAGCUGCAACUGGGUUUAUACCGAGCUGGACAAAGGA
.((((..(((.((((....).)))....)))(((((((..(((((((((....))....((....))..)))))))..)).)))))))))....... ( -25.80)
>DroSec_CAF1 129060 97 + 1
CUUCAAAGGUGGCCCGAAGGUUGCAGGAAGUGCUUGUAAGGACCCAGUCGAAGGAGAGCGCAGCUGCAACUGGGUUUAUACCGAGCUGGACAAAGGA
((((....(..(((....)))..)..)))).(((((((..(((((((((....))....((....))..)))))))..)).)))))........... ( -32.20)
>DroSim_CAF1 136195 97 + 1
CUUCAAAGGUGGCCCGAAGGUUGCAGGAAGUGCUUGUAAGGACCCAGUCGAAGGAGAGCGCAGCUGCAACUGGGUUUAUACCGAGCUGGACAAAGGA
((((....(..(((....)))..)..)))).(((((((..(((((((((....))....((....))..)))))))..)).)))))........... ( -32.20)
>DroEre_CAF1 130275 97 + 1
CUCCAAAGGUGGCCCGAAGGUUGCAGGAAGUGCUUGUAAGGACACAGUCGAAGGAGGGCGCAGCUGCAACUGGGUUUAUACCGAGCUGGAGAGAGGA
(((((..((((((((...((((((((...((((((.....(((...)))......))))))..))))))))))))...))))....)))))...... ( -34.80)
>DroYak_CAF1 139073 97 + 1
CUUCAAAGGUGGCCCGAAGGUUGCAGGAAGUGUGUGUAAGGACACAGUCGAAGGAGAGCGCCGCUGCAACUUGGUUUAUACCGAGCUGGAGAAAGGA
((((....(..(((....)))..)..((..(((((......))))).)))))).......((.((.((.((((((....)))))).)).))...)). ( -30.30)
>consensus
CUUCAAAGGUGGCCCGAAGGUUGCAGGAAGUGCUUGUAAGGACCCAGUCGAAGGAGAGCGCAGCUGCAACUGGGUUUAUACCGAGCUGGACAAAGGA
.((((..((((((((...((((((((...((((((.....(((...)))......))))))..))))))))))))...))))....))))....... (-26.16 = -26.52 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:47 2006