Locus 6503

Sequence ID 2L_DroMel_CAF1
Location 18,280,935 – 18,281,055
Length 120
Max. P 0.660452
window10379

overview

Window 9

Location 18,280,935 – 18,281,055
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.06
Mean single sequence MFE -45.32
Consensus MFE -30.95
Energy contribution -31.62
Covariance contribution 0.67
Combinations/Pair 1.33
Mean z-score -1.76
Structure conservation index 0.68
SVM decision value 0.27
SVM RNA-class probability 0.660452
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18280935 120 - 22407834
AAACUCAGGACUUCAUUCGAGCGAUAGAGGCCAGGGAUCGCAACGUGGCCGAAUCCACCUACUCCAUGGUCAACAAAUGGUCGUGGGCCCAAUUUUUGUCCAUGAUAUUUGUUGGCUUUC
.......(((.(((..((........))(((((.(........).)))))))))))...........((((((((((((.((((((((.........))))))))))))))))))))... ( -40.60)
>DroPse_CAF1 144444 120 - 1
AGACCCAGGACUACAUACGGGCCCACGAGGCCCGCGACCGCCGGCUGGCCGAGUCCAACUACGAGAUGGUCAACAACUGGUCCUGGGCCCAGUUCCUGGCCAUGAUCUUCGUCGGCCUGC
...((((((((((....((((((.....)))))).(((((((....)))((((.....)).))....))))......))))))))))..........(((((((.....))).))))... ( -50.10)
>DroSec_CAF1 124406 120 - 1
AAACGCAGGACUUCAUUCGAGCGAGCGAGGCCAGGGAUCGUAACUUGGCCGAAUCCACCAACUCCAUGGUCAACAAGUGGUCGUGGGCCCAAUUUUUGUCCAUGAUAUUCGUUGGCUUCC
.......(((.(((..(((......)))(((((((........)))))))))))))...........(((((((.((((.((((((((.........)))))))))))).)))))))... ( -39.90)
>DroEre_CAF1 125781 120 - 1
AAACUCAGGACUUCAUUCGAGCGAUCGAGGCCAGGGAUCGCAAUGUGGCCGAGUCCACCUACUCCAUGGUCAACUACUGGUCGUGGACCCAAUUUUUGGCCAUGAUAUUUGUUGGCUUCC
.......((((((...((((....))))(((((.(........).)))))))))))...........(((((((.....(((((((.((........)))))))))....)))))))... ( -40.80)
>DroAna_CAF1 116000 120 - 1
AGACGCAGGACUUCAUCCGGGCGCACGAGGCCAGGGACAGGAAUCUGGCCGAGUCCAACUACGCCAUGGUCAACAACUGGUCCUGGGCCCAGUUCCUGGCCAUGAUUUUGGUGGGCUUGC
.(.(((.(((.....)))..))))....(((((((........)))))))(((((((.(((...((((((((..((((((.(....).))))))..))))))))....)))))))))).. ( -51.00)
>DroPer_CAF1 146602 120 - 1
AGACCCAGGACUACAUACGGGCCCACGAGGCCCGCGACCGCCGGCUGGCCGAAUCCAACUACGAGAUGGUCAACAACUGGUCCUGGGCCCAGUUCCUGGCCAUGAUCUUCGUCGGCCUGC
...((((((((((....((((((.....)))))).((((..(((....))).((((......).)))))))......))))))))))..........(((((((.....))).))))... ( -49.50)
>consensus
AAACCCAGGACUUCAUUCGAGCGAACGAGGCCAGGGACCGCAACCUGGCCGAAUCCAACUACGCCAUGGUCAACAACUGGUCCUGGGCCCAAUUCCUGGCCAUGAUAUUCGUUGGCUUGC
..................((((.((((((((((((........)))))))..............((((((((......(((.....))).......))))))))....))))).)))).. (-30.95 = -31.62 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:46 2006