Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,279,868 – 18,279,959 |
Length | 91 |
Max. P | 0.989438 |
Location | 18,279,868 – 18,279,959 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 90.38 |
Mean single sequence MFE | -29.58 |
Consensus MFE | -23.72 |
Energy contribution | -25.78 |
Covariance contribution | 2.06 |
Combinations/Pair | 1.09 |
Mean z-score | -2.53 |
Structure conservation index | 0.80 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989438 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18279868 91 + 22407834 GGCGUUACCGUCAACCCAAACGAUUGUGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUAC--------------UGAAAGUAAUUUCAACAAAA ...(((.((..((.(((((....))).)).))..)))))(((((((((.(((....))).)))))))))..--------------(((((....)))))...... ( -24.90) >DroSec_CAF1 123323 105 + 1 GGCGUUACCGUCAACCAAAACGAUUGUGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUACUGUGGCGCCUUAACUGAAAUUAAUUUCAACAAAA ((((((((.(((..(((..((....))...)))...)))(((((((((.(((....))).)))))))))...)))))))).....(((((....)))))...... ( -31.90) >DroSim_CAF1 130108 105 + 1 GGCGUUACCGUCAACCAAAACGAUUGUGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUACUGUGGCGCCUUAACUGAAAUUAAUUUCAACAAAA ((((((((.(((..(((..((....))...)))...)))(((((((((.(((....))).)))))))))...)))))))).....(((((....)))))...... ( -31.90) >DroEre_CAF1 124746 105 + 1 GGCGUUACCGUCAACCAAAACGAAUGUUGAUGGAGGGACAGUUUAAGUGGCCAACGGGGGACUUAAAUUACUGUGGUGCCUUAACUGAAAUUAAUUUCAUCAAAA ((((...((((((((..........))))))))....(((((((((((..((....))..))))))...)))))..)))).....(((((....)))))...... ( -26.20) >DroYak_CAF1 133397 105 + 1 GGCGUUACCGUCAACCAAAACGAAUGCGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUACUGUGGCGCCUUAACUGAAAUGAAUUUCAACAAAA ((((((((.(((..(((...((....))..)))...)))(((((((((.(((....))).)))))))))...)))))))).....(((((....)))))...... ( -33.00) >consensus GGCGUUACCGUCAACCAAAACGAUUGUGGAUGGAGGGACAAUUUAAGUGCCCAACGGGGGAUUUAAAUUACUGUGGCGCCUUAACUGAAAUUAAUUUCAACAAAA ((((((((.(((..(((..((....))...)))...)))(((((((((.(((....))).)))))))))...)))))))).....(((((....)))))...... (-23.72 = -25.78 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:45 2006