Locus 6501

Sequence ID 2L_DroMel_CAF1
Location 18,278,195 – 18,278,314
Length 119
Max. P 0.800998
window10377

overview

Window 7

Location 18,278,195 – 18,278,314
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 78.17
Mean single sequence MFE -26.16
Consensus MFE -15.72
Energy contribution -16.92
Covariance contribution 1.20
Combinations/Pair 1.26
Mean z-score -1.90
Structure conservation index 0.60
SVM decision value 0.62
SVM RNA-class probability 0.800998
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18278195 119 + 22407834
CUCCAACAAUUGAAUGCUCAAGACAGACAUACUGGUCAUUCAUAUUCAUUUGACCGCAUACUGUGACCAAUGUUUGUUGAUGAUGCCCACAAUAGCAGCAAUAUUCGAUUGCCACAUUU
......((((((((((((((.(((((((((..((((((((((........))).........))))))))))))))))..)))(((........))))))...))))))))........ ( -29.60)
>DroSec_CAF1 121705 119 + 1
CUCCAACUAUUGAAUGCUCAACACAGACAUACUGGUCAUGCAUAAUCAUUUGGCCCCAUACUGUGACCAAUGUUUGUUGAUGAUGCCCACGAUGGCAACAAUAUUCGAUUGCCAUAUUU
........((((((((.((((((..(((((..(((((((((.(((....)))))........))))))))))))))))))((.((((......)))).)).)))))))).......... ( -26.90)
>DroSim_CAF1 128459 119 + 1
CUUCAACUAUUGAAUGCUCAAAACAGACAUACUGGUCAUGCAUAAUCAUUUGGCCCCAUACUGUGACCAAUGUUUGUUGAUGAUGCCCACGAUGGCAACAAUAUUCGAUUGCCACAUUU
........((((((((.(((.(((((((((..(((((((((.(((....)))))........))))))))))))))))..)))((((......))))....)))))))).......... ( -27.80)
>DroEre_CAF1 123346 99 + 1
-------UAUUGAAAGAACGAAACAGUCAUAAUCGUCCUUAAUUUACAU-UGGCCGCAUACUGUGACCAAUGUUUGUUGACGAUGCCGACGAAGCUAACAAUAUUUG------------
-------(((((..((.........(((...((((((...(((..((((-(((.(((.....))).)))))))..)))))))))...)))....))..)))))....------------ ( -24.82)
>DroYak_CAF1 131677 110 + 1
--------AUCAAACGCUCGAAACAGACAUAAUCGUUAUUAAUUAUCAU-UGGCCGCAUACUGUGACCAAUGUUUGUUGAUGAUGCCAACGAUGCCAACUAUAUUUGAUUGCCAGAAUU
--------.......(((((.....((.....))(((((((((...(((-(((.(((.....))).))))))...))))))))).....))).))........((((.....))))... ( -21.70)
>consensus
CU_CAACUAUUGAAUGCUCAAAACAGACAUACUGGUCAUUCAUAAUCAUUUGGCCGCAUACUGUGACCAAUGUUUGUUGAUGAUGCCCACGAUGGCAACAAUAUUCGAUUGCCACAUUU
........((((((((.(((.(((((((((..(((((((.......................))))))))))))))))..)))((((......))))....)))))))).......... (-15.72 = -16.92 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:44 2006