Locus 6500

Sequence ID 2L_DroMel_CAF1
Location 18,270,810 – 18,270,907
Length 97
Max. P 0.823744
window10376

overview

Window 6

Location 18,270,810 – 18,270,907
Length 97
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 96.37
Mean single sequence MFE -17.62
Consensus MFE -14.82
Energy contribution -15.18
Covariance contribution 0.36
Combinations/Pair 1.06
Mean z-score -2.06
Structure conservation index 0.84
SVM decision value 0.69
SVM RNA-class probability 0.823744
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18270810 97 - 22407834
AUA-CGAGCUAAGGCCAUAAAAACAUAUUGGCAACAUUUCAAACUCUCCAAAGUUCUUUUACCUUUGGCCCAGUGAAAGACCCAAAACAACAGCACAC
...-...(((...((((...........))))....(((((......((((((.........)))))).....))))).............))).... ( -16.40)
>DroSec_CAF1 114354 97 - 1
AUA-CGAGCUAAGGCCAUAAAAACAUAUUGGCAACAUUUCAAACUCUCCAAAGUUCUUUUACCUUUGGCCCAGUGAAAGACGCAAAACAACAGCACAC
...-...(((...((((...........))))....(((((......((((((.........)))))).....))))).............))).... ( -16.40)
>DroSim_CAF1 120828 97 - 1
AUA-CGAGCUAAGGCCAUAAAAACAUAUUGGCAACAUUUCAAACUCUCCAAAGUUCUUUUACCUUUGGCCCAGUGAAAGACCCAAAACAACAGCACAC
...-...(((...((((...........))))....(((((......((((((.........)))))).....))))).............))).... ( -16.40)
>DroEre_CAF1 115529 97 - 1
AUG-CGAGCUAAGGCCAUAAAAACAUAUUGGCAACAUUUCAAACUCUCCAAAGUUCUUUUACCUUUGGCCCAGUGAAAGACCCAAAACAACAGCACAC
...-...(((...((((...........))))....(((((......((((((.........)))))).....))))).............))).... ( -16.40)
>DroYak_CAF1 119208 97 - 1
AUA-CGAGCUAAGGCCAUAAAAACAUAUUGGCAACAUUUCAAACUCUCCAAAGUUCUUUUACCUUUGGCCCAGUGAAAGACCCAAAACAACAGCACAC
...-...(((...((((...........))))....(((((......((((((.........)))))).....))))).............))).... ( -16.40)
>DroAna_CAF1 106273 98 - 1
AUGCCGAGCGACGGCCAUAAAAACAUAUUGGCAACAUUUCAAACUCGCCAAAGUUCUUUUACCUUUGGCCCAGUGCUGAACCCAAAACAACAGCACAC
..((((.....)))).............((....))..........(((((((.........)))))))...((((((............)))))).. ( -23.70)
>consensus
AUA_CGAGCUAAGGCCAUAAAAACAUAUUGGCAACAUUUCAAACUCUCCAAAGUUCUUUUACCUUUGGCCCAGUGAAAGACCCAAAACAACAGCACAC
.......(((...((((...........))))....(((((......((((((.........)))))).....))))).............))).... (-14.82 = -15.18 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:43 2006