Locus 6499

Sequence ID 2L_DroMel_CAF1
Location 18,266,017 – 18,266,111
Length 94
Max. P 0.567599
window10375

overview

Window 5

Location 18,266,017 – 18,266,111
Length 94
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 84.97
Mean single sequence MFE -23.38
Consensus MFE -16.72
Energy contribution -18.36
Covariance contribution 1.64
Combinations/Pair 1.04
Mean z-score -1.65
Structure conservation index 0.72
SVM decision value 0.07
SVM RNA-class probability 0.567599
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18266017 94 - 22407834
GCCAUUUCCACAGCCACCUGACAUAACAGGACACUUGCAAAAAGUGCGCU--UUUUGGGAAUGGGAUAAAAAGAUGUGA-AAAACUGGAAAUUCAGA
.(((((((((.(((..((((......)))).(((((.....))))).)))--...)))))))))...............-....((((....)))). ( -25.80)
>DroSec_CAF1 109544 95 - 1
GCCAUUUCCACAGCCACCUGACAUAACAGGACACUUGCAAAAAGCGCGCU--UUUUGGGAAUGGUUUAAAAAGAAAUGAUAAAACUGGAAAUUCAGA
((((((((((.((((.((((......))))......((.....))).)))--...))))))))))...................((((....)))). ( -23.80)
>DroSim_CAF1 115781 95 - 1
GCCAUUUCCACAGCCACCUGACAUAACAGGACACUUGCAAAAAGUGCUCU--UUUUGGGAACGGUUUAAAAAGAUAUGAAAAAACUGGAAAUUCAGA
(((.((((((......((((......)))).(((((.....)))))....--...)))))).)))...................((((....)))). ( -19.80)
>DroEre_CAF1 110719 95 - 1
GCCAUUUCCACAGCCACCUGACAUAACAGGACACUUGCAAAAAGGGAGCU-UUUUCGGGAAUGGGCUUAACAGGGAUCA-UAGACUGGAAAGCCAGU
..(((((((.......((((......))))......(.((((((....))-))))))))))))(((((..(((......-....)))..)))))... ( -28.70)
>DroYak_CAF1 114441 96 - 1
GCCAUUUCCACAGCCACCUGACAUAGCAGGACACUUGCAAAAAGUACGCUAUUUUUGGGAACGUGCUUGAAAGAGAUUA-CAGACUGGACUUUGAGU
........((.(((((((((......))))...(((.....((((((((((....)))...)))))))....)))....-.....))).)).))... ( -18.80)
>consensus
GCCAUUUCCACAGCCACCUGACAUAACAGGACACUUGCAAAAAGUGCGCU__UUUUGGGAAUGGGCUAAAAAGAGAUGA_AAAACUGGAAAUUCAGA
.(((((((((.(((..((((......)))).(((((.....))))).))).....)))))))))....................((((....)))). (-16.72 = -18.36 +   1.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:42 2006