Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,259,715 – 18,259,814 |
Length | 99 |
Max. P | 0.718673 |
Location | 18,259,715 – 18,259,814 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 94.85 |
Mean single sequence MFE | -30.72 |
Consensus MFE | -26.75 |
Energy contribution | -26.75 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.33 |
Structure conservation index | 0.87 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.718673 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18259715 99 + 22407834 CACAACGCAUGCUGAGAGCUCGGCCCUAGAAGCCGUGACAAGAAGAGGAAGAGCAAGUGGGCGGAGCUGAGGGGGCGUGUCGGUUAAAGGAGCAGAAGA .....((((((((...(((((.((((.....((..(..(.......)..)..))....)))).))))).....)))))).))................. ( -27.40) >DroSec_CAF1 103111 99 + 1 CACAACGCAUGCUGAGAGCUCGGCCCUAGAAGCCGUGGCAAGAAGAGGAAGAGCAAGUGGGCGGAGCUGAGGGGGCGUGUCGGUUAAAGGAGCAGAAGA .....((((((((...(((((.((((.....((....)).......(......)....)))).))))).....)))))).))................. ( -28.00) >DroSim_CAF1 108876 99 + 1 CACAACGCAUGCUGAGAGCUCGGCCCUAGAAGCCGUGGCAAGAAGAGGAAGAGCAAGUGGGCGGAGCUGAGGGGGCGUGUCGGUUAAAGGAGCAGAAGA .....((((((((...(((((.((((.....((....)).......(......)....)))).))))).....)))))).))................. ( -28.00) >DroEre_CAF1 104332 98 + 1 CACAACGCAUGCUGAGAGCUCGGCCCUAGGAGCCAUGGCUAGAAGAGGAAGCGCAAGUGGGCGGAGCUGAG-GGGCGUGUCGGUGAAAGGAGCAGAAGA (((...(((((((...(((((.((((....(((....)))..........((....)))))).)))))...-.)))))))..))).............. ( -36.30) >DroYak_CAF1 108304 99 + 1 CACAACGCAUGCUGAGAGCUCGGCCCUGGGAGCCGUGGCAAGAAGAGGAGGCGCAAGUGGGCGGAGCUAAGAGGGCGUGUCGGUUAAAGAAGCAGAAGA .....((((((((...(((((.((((.....((....))...........((....)))))).))))).....)))))).))................. ( -33.90) >consensus CACAACGCAUGCUGAGAGCUCGGCCCUAGAAGCCGUGGCAAGAAGAGGAAGAGCAAGUGGGCGGAGCUGAGGGGGCGUGUCGGUUAAAGGAGCAGAAGA .....((((((((...(((((.((((.....(((................).))....)))).))))).....)))))).))................. (-26.75 = -26.75 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:41 2006