Locus 6495

Sequence ID 2L_DroMel_CAF1
Location 18,251,370 – 18,251,461
Length 91
Max. P 0.840365
window10369

overview

Window 9

Location 18,251,370 – 18,251,461
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 82.51
Mean single sequence MFE -27.05
Consensus MFE -20.26
Energy contribution -20.43
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.30
Structure conservation index 0.75
SVM decision value 0.75
SVM RNA-class probability 0.840365
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18251370 91 - 22407834
----------------------------CCUUCUGCGUAAGCCAUAUGUAGAUAUAUGUUUAUGUCU-GUGCACUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAA
----------------------------......((....))...((((((((((............-.(((((((((...((((((...)))))).)))))).)))))))))))))... ( -23.71)
>DroPse_CAF1 108502 108 - 1
-----------CCGGCGUACCGCGUAUCCGUAUUCCGUAAGCCAUAUGUAGAUAUAUGUUUAUGUCU-GUGCACUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAA
-----------..(((.(((.(.(((....))).).))).)))..((((((((((............-.(((((((((...((((((...)))))).)))))).)))))))))))))... ( -28.21)
>DroEre_CAF1 96145 91 - 1
----------------------------CCUCCUGCGAAAGCCAUAUGUAGAGAUAUGUUUAUGUCU-GUGCACUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAA
----------------------------......((....))...((((((((((((....))))).-.(((((((((...((((((...)))))).)))))).)))...)))))))... ( -25.70)
>DroWil_CAF1 133395 87 - 1
--------------------------------UUCUGUAAGCCAUAUGUAGAUAUAUGUUUAUGUCU-GUGCACUACACUUGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAA
--------------------------------...((((..(......((((((((....)))))))-)(((((((((..(((((((...))))))))))))).)))..)..)))).... ( -24.10)
>DroAna_CAF1 88667 89 - 1
----------------------------CUUCCU--GUAAGCCAUAUGUAGAUAUAUGUUUAUGUCU-GUGCACUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAA
----------------------------.....(--(((..(......((((((((....)))))))-)(((((((((...((((((...)))))).)))))).)))..)..)))).... ( -22.40)
>DroPer_CAF1 110578 120 - 1
CGGGGGAGUGCCCGGCGUACCGCGUAUCCGUAUUCCGUAAGCCAUAUGUAGAUAUAUGUUUAUGUCUGGUGCACUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAA
.(((..((((((((((.(((.(.(((....))).).))).)))......(((((((....))))))))).)))))...)))((((((...))))))((((((.(.....).))))))... ( -38.20)
>consensus
____________________________CCUACUCCGUAAGCCAUAUGUAGAUAUAUGUUUAUGUCU_GUGCACUACACUCGACGAUAAAAUCGUCAUGUAGUCGUAAUGUCUGCAUCAA
.............................................((((((((((..............(((((((((...((((((...)))))).)))))).)))))))))))))... (-20.26 = -20.43 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:36 2006