Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 18,242,969 – 18,243,066 |
Length | 97 |
Max. P | 0.885960 |
Location | 18,242,969 – 18,243,066 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.64 |
Mean single sequence MFE | -16.82 |
Consensus MFE | -12.22 |
Energy contribution | -12.50 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.08 |
Mean z-score | -2.48 |
Structure conservation index | 0.73 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885960 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18242969 97 + 22407834 GUCAACGGACAAAAAAAAAAAAAAAGGGAAAAAAUAGAUGUAGAAAAACAUAUAUUUAUGCCUGGGAAGUUUAGAAUAUAUGAGAGAUGUCGGGCAU (((....))).......................(((((((((........)))))))))((((((.(..((((.......))))...).)))))).. ( -16.50) >DroSec_CAF1 86181 91 + 1 GUCAACGGAACAAA------AAAAAGGGAAAAAAUAGAUGUAUAAAAACACAUAUUUAUGCCUGGGCAGUUUAGAAUAUAUGAGAGAUGUCGGGCAU ..............------...........(((((..(((......)))..)))))((((((((.((.((((.......))))...)))))))))) ( -14.40) >DroSim_CAF1 90320 94 + 1 GUCAACGGACCAAAAA---AAAAAAGGGAAAAAAUAGAUGUAUAAAAACACAUAUUUAUGCCUGGGCAGUUUAGAAUAUAUGAGAGAUGUCGGGCAU (((....)))......---............(((((..(((......)))..)))))((((((((.((.((((.......))))...)))))))))) ( -15.60) >DroEre_CAF1 87792 96 + 1 GUCAAAAGACCAAAAAAG-AAAAAAGGGGAAAAAUAUAUGUAUAAAAACAUAUAUUUAUGCCUGGGCAGUUUAGAAUAUAUGAGAAAUGUCGGGCAU (((....)))........-............((((((((((......))))))))))((((((((.((.((((.......))))...)))))))))) ( -20.50) >DroYak_CAF1 91685 91 + 1 GUCAACAGACCAAAA------AAAAGGGGAAAAAUAGAUGUAUAAAAAUAUAUAUUUAUGCCUGGGCAGUUUAGAAUGUAUGAGAGAUCUCGGGUAU (((....))).....------............(((((((((((....)))))))))))(((((((...((((.......))))....))))))).. ( -17.10) >consensus GUCAACGGACCAAAAA___AAAAAAGGGAAAAAAUAGAUGUAUAAAAACAUAUAUUUAUGCCUGGGCAGUUUAGAAUAUAUGAGAGAUGUCGGGCAU (((....))).....................(((((.((((......)))).)))))((((((((....((((.......)))).....)))))))) (-12.22 = -12.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:32 2006