| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,238,044 – 18,238,146 |
| Length | 102 |
| Max. P | 0.862470 |
| Location | 18,238,044 – 18,238,146 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.41 |
| Mean single sequence MFE | -32.00 |
| Consensus MFE | -21.36 |
| Energy contribution | -23.52 |
| Covariance contribution | 2.16 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18238044 102 - 22407834 AAACAA-CAAC-UGCCCCAGGAAUGGGGUAAAUUUAAUAUGCCCGUUGCACU---AGGCAAUGAAACAGCUUGUGGAACUGCAAUGGUGCAACACG-UGCAUGUGUGC ......-....-(((((((....)))))))......(((((((.((((((((---(.(((.....((.....)).....)))..)))))))))..)-.)))))).... ( -32.80) >DroSim_CAF1 85351 102 - 1 CAGCAA-CAAC-UGCCCCAGGAAUGGGGUAAAUUUAAUAUGCCCGUUGCACU---AGGCAAUGAAACAGCUUGUGGAACUGCAAUGGUGCAGCACG-UGCAUGUGUGC ..(((.-....-(((((((....)))))))......(((((((.((((((((---(.(((.....((.....)).....)))..)))))))))..)-.)))))).))) ( -34.40) >DroEre_CAF1 82782 102 - 1 CAACAU-CAAC-UGCCACAGGAAUGGGGUAAAUUUAAUAUGCCCGUUGCACC---AGGCAAUGAAACAGCUUGUGGAACUGCAAUGGUGCAACACG-UGCAUGUGUGC ......-....-.((((((...((((((((.........)))))((((((((---(.(((.....((.....)).....)))..))))))))).))-)...)))).)) ( -32.70) >DroYak_CAF1 85587 102 - 1 CAACAU-CAAC-UGCCCCAGAAAUGGGGUAAAUUUAAUAUGCCCGUUGCACU---AGGCAAUGAAACAGCUUGUGGAACUGCAAUGGUGCAACACG-UGCAUGUGAGC .....(-(...-(((((((....)))))))......(((((((.((((((((---(.(((.....((.....)).....)))..)))))))))..)-.)))))))).. ( -34.90) >DroAna_CAF1 76169 89 - 1 A-------AAC-AGCCC-------GGGGCAAAUUUAAUAUGCCCGUUGCACU---AGGCAAUGAAACAGCUUGUGCAACUGCAGCGGUGCAACACG-UGCAUGUGUGC .-------...-.((((-------((((((.........)))))(((((((.---((((.........))))))))))).....))).)).(((((-....))))).. ( -32.10) >DroPer_CAF1 93687 89 - 1 CAACGUGCAACGUGCCACA---------UAGAUUUAAUAUGCAGUCUGCAGUUGGAGGCAAUGAAACAGCUU--------GCAACGGUGCAACACGGUGCAAGUG--C ..((.((((.((((.(((.---------((((((........))))))..((((.((((.........))))--------.)))).)))...)))).)))).)).--. ( -25.10) >consensus CAACAU_CAAC_UGCCCCAGGAAUGGGGUAAAUUUAAUAUGCCCGUUGCACU___AGGCAAUGAAACAGCUUGUGGAACUGCAAUGGUGCAACACG_UGCAUGUGUGC ............(((((((....)))))))......((((((..((((((((.....(((.....((.....)).....)))...)))))))).....)))))).... (-21.36 = -23.52 + 2.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:31 2006