| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,234,394 – 18,234,490 |
| Length | 96 |
| Max. P | 0.703081 |
| Location | 18,234,394 – 18,234,490 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 82.85 |
| Mean single sequence MFE | -27.72 |
| Consensus MFE | -17.64 |
| Energy contribution | -18.20 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.703081 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18234394 96 + 22407834 GGAGGAAAACUGGGAAAGCUGGGGAAAAGAGCAUAUGUAAAUGUAUUUGCCAAGUGGCAAGGCGACAGUUUUAUUGAGCUUAUCUUGGCUUUCGUA .............((((((..(((....((((....((((((((.((((((....))))))...)))..)))))...)))).)))..))))))... ( -27.50) >DroSec_CAF1 77547 96 + 1 GGUGGAAAGCGGGGAAAGCUGGGGAAAAGAGCAUAUGUAAAUGUAUUUGCCAAGUGGCAAGGCGACAGUUUUAUUGAGCUUAUCUUGGCUUUCGCA .(((.(((((.(((((((((.((.((((..((....))...(((.((((((....))))))...))).)))).)).))))).)))).)))))))). ( -29.60) >DroSim_CAF1 81714 96 + 1 GGUGGAAAGCGGGGAAAGCUGGGGAAAAGAGCAUAUGUAAAUGUAUUUGCCAAGUGGCAAGGCGACAGUUUUAUUGAGCUUAUCUUGGCUUUCGCA .(((.(((((.(((((((((.((.((((..((....))...(((.((((((....))))))...))).)))).)).))))).)))).)))))))). ( -29.60) >DroEre_CAF1 79094 86 + 1 GGGGC---------AGAGCCGGGGA-AAGAGCAUAUGUAAAUGUAUUUGCCAAGUGGCAAGGCGACAGUUUUAUUGAGCUUAUCUUGGCUUUCGCA ...((---------((((((((((.-(((..((.(((....(((.((((((....))))))...)))....)))))..))).)))))))))).)). ( -30.50) >DroYak_CAF1 81968 87 + 1 GAAGC---------AAAGCUGGGGAAAAGAGCAUAUGUAAAUGUAGUUGCCAAGUGGCAAGGCGACAGUUUUAUUGAGCUUAUCUUGGCUUUCGCA ...((---------(((((..(((....((((....(((((....((((((.........))))))...)))))...)))).)))..))))).)). ( -25.90) >DroMoj_CAF1 135483 92 + 1 GAAAGAGA----GCAGCCCUAACGAAGUAGCUGUAUGCAAAUGUAUUUGCCAAGUGCCAAGGCGACAGUUUUAUUGAGCUUAUCUCAGCUGCUGUA .....(.(----(((((...........((((((..(((((....)))))....(((....)))))))))....((((.....)))))))))).). ( -23.20) >consensus GGAGGAAA____GGAAAGCUGGGGAAAAGAGCAUAUGUAAAUGUAUUUGCCAAGUGGCAAGGCGACAGUUUUAUUGAGCUUAUCUUGGCUUUCGCA ..............((((((((((....((((..(((....(((.((((((....))))))...)))....)))...)))).)))))))))).... (-17.64 = -18.20 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:30 2006