| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,233,628 – 18,233,720 |
| Length | 92 |
| Max. P | 0.662221 |
| Location | 18,233,628 – 18,233,720 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 83.67 |
| Mean single sequence MFE | -13.98 |
| Consensus MFE | -9.56 |
| Energy contribution | -9.03 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.43 |
| Mean z-score | -2.40 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.662221 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18233628 92 - 22407834 GACAAACGGAGAGCACAAAAUAAAAAUUAAUUCAUGACGACAAAAGUCAAUUUUGU--AAAUCCACAAAACAUAUGGUGCAAAAAACCACAACA .......(((....(((((((.............((((.......)))))))))))--...)))..........((((.......))))..... ( -13.01) >DroSec_CAF1 76779 92 - 1 AACAAGCUGAGAGCACAAAAUAAAAAUUAAUUCAUGACGACAAAAGUCAAUUUUGU--AAAUCCACAAAACAUAUGGUGCAAAAAACCACAACA ............((((...(((............((((.......)))).((((((--......))))))..))).)))).............. ( -12.60) >DroSim_CAF1 80946 92 - 1 GACAAGCUGACAGCACAAAAUAAAAAUUAAUUCAUGACGACAAAGGUCAAUUUUGU--AAAUCCACAAAACAUAUGGUGCAAAAAACCACAACA ............((((...(((............((((.......)))).((((((--......))))))..))).)))).............. ( -12.00) >DroEre_CAF1 78335 92 - 1 GACAAGCGGAGGGCACCAAAUAAAAAUUAAUUCAUGACGACAAAAGUCAAUUUUGU--AAAUCCACAAAACAUAUGGUGCAAAAGACCACAACA .....(.((...((((((................((((.......)))).((((((--......))))))....))))))......)).).... ( -17.70) >DroYak_CAF1 81201 92 - 1 GACAAGGGGAGAGCGCAAAAUAAAAAUUAAUUCAUGACGACAAAAGUCAAUUUUGU--AAAUCCACAAAACAUAUGGUGCAAAAAACCACAACA .....((.....((((...(((............((((.......)))).((((((--......))))))..))).))))......))...... ( -13.50) >DroMoj_CAF1 134537 85 - 1 UACAA------UAUGGAGCAAAGAAUUUAAUUCAUGACGACAAAAGUCGAUGCUCUCCAAGUCAGAAAAACAUAUGGCAUAACAGCA-ACAA-- .....------...((((((..((((...))))....((((....)))).))))))....((((..........)))).........-....-- ( -15.10) >consensus GACAAGCGGAGAGCACAAAAUAAAAAUUAAUUCAUGACGACAAAAGUCAAUUUUGU__AAAUCCACAAAACAUAUGGUGCAAAAAACCACAACA ............((((..................((((.......)))).((((((........))))))......)))).............. ( -9.56 = -9.03 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:29 2006