Locus 6488

Sequence ID 2L_DroMel_CAF1
Location 18,233,351 – 18,233,445
Length 94
Max. P 0.995442
window10359 window10360

overview

Window 9

Location 18,233,351 – 18,233,445
Length 94
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 92.79
Mean single sequence MFE -28.40
Consensus MFE -21.42
Energy contribution -21.92
Covariance contribution 0.50
Combinations/Pair 1.11
Mean z-score -5.21
Structure conservation index 0.75
SVM decision value 2.58
SVM RNA-class probability 0.995442
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18233351 94 + 22407834
AAGAA-AUUUUCUCUAAUGGCUUUCUUUGGUUGGCCACAACGGAAACAAAAGACCAAAUGCCAAAGCCACAAAAGGAGAGAAAAUUUCAAUUCAA
..(((-(((((((((..(((((((.((((((((....)...(....)....)))))))....))))))).......))))))))))))....... ( -28.60)
>DroSec_CAF1 76503 94 + 1
AAGAA-AUUUUCUCUAAUGGCUUUCUUCGGUUGGCCACAACGGAAACAAAAGACCAAAUGCCAAAGCCACAAAAGGAGAGAAAAUUUCAAUUCAA
..(((-(((((((((..(((((((..((.((((....))))(....)....))..))).))))...((......))))))))))))))....... ( -27.80)
>DroSim_CAF1 80670 94 + 1
AAGAA-AUUUUCUCUAAUGGCUUUCUUCGGUUGGCCACAACGGAAACAAAAGACCAAAUGCCAAAGCCACAAAAGGAGAGAAAAUUUCAAUUCAA
..(((-(((((((((..(((((((..((.((((....))))(....)....))..))).))))...((......))))))))))))))....... ( -27.80)
>DroEre_CAF1 78060 94 + 1
AAGAA-AUUUUCUCUAAUGGCUUUCUUUGGUUGGCCACAAAGGAAACAAAAGACCAAAUGCCAAAGCCGCAAAAGGAGAGAAAAUUUCAAUUCAA
..(((-(((((((((..((((....((((((((....)...(....)....))))))).))))...((......))))))))))))))....... ( -29.20)
>DroYak_CAF1 80922 94 + 1
AAGAA-AUUUUCUCUAAUGGCUUUCUUUGGUUGGCCACAAAGGAAACAAAAGACCAAAUGCCAAAGCCACAAAAGGAGAGAAAAUUUCAAUUCAA
..(((-(((((((((..(((((((.((((((((....)...(....)....)))))))....))))))).......))))))))))))....... ( -28.50)
>DroAna_CAF1 71107 95 + 1
GGGAAAAUUUCCUUUAAUGGCUUUUGUUGGUCGCCCGCAAUGGAAACAAAAGACCAAAGCCAAAUGCCGCAAAAGGAGAGAAAUUUUCAAUUCAA
(..((..((((((((..((((.(((((((((((....)..((....))...))))))...)))).))))..))))))))....))..)....... ( -28.50)
>consensus
AAGAA_AUUUUCUCUAAUGGCUUUCUUUGGUUGGCCACAACGGAAACAAAAGACCAAAUGCCAAAGCCACAAAAGGAGAGAAAAUUUCAAUUCAA
..(((.(((((((((..(((((((.((((((((....)...(....)....)))))))....))))))).......))))))))))))....... (-21.42 = -21.92 +   0.50)

alignment

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secondary structure

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dotplot

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Window 0

Location 18,233,351 – 18,233,445
Length 94
Sequences 6
Columns 95
Reading direction reverse
Mean pairwise identity 92.79
Mean single sequence MFE -28.15
Consensus MFE -19.22
Energy contribution -19.94
Covariance contribution 0.72
Combinations/Pair 1.08
Mean z-score -3.98
Structure conservation index 0.68
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18233351 94 - 22407834
UUGAAUUGAAAUUUUCUCUCCUUUUGUGGCUUUGGCAUUUGGUCUUUUGUUUCCGUUGUGGCCAACCAAAGAAAGCCAUUAGAGAAAAU-UUCUU
.......((((((((((((......((((((((((...((((((...............)))))))))....))))))).)))))))))-))).. ( -28.46)
>DroSec_CAF1 76503 94 - 1
UUGAAUUGAAAUUUUCUCUCCUUUUGUGGCUUUGGCAUUUGGUCUUUUGUUUCCGUUGUGGCCAACCGAAGAAAGCCAUUAGAGAAAAU-UUCUU
.......((((((((((((......(((((((((((.....))).....((((.((((....)))).)))))))))))).)))))))))-))).. ( -28.50)
>DroSim_CAF1 80670 94 - 1
UUGAAUUGAAAUUUUCUCUCCUUUUGUGGCUUUGGCAUUUGGUCUUUUGUUUCCGUUGUGGCCAACCGAAGAAAGCCAUUAGAGAAAAU-UUCUU
.......((((((((((((......(((((((((((.....))).....((((.((((....)))).)))))))))))).)))))))))-))).. ( -28.50)
>DroEre_CAF1 78060 94 - 1
UUGAAUUGAAAUUUUCUCUCCUUUUGCGGCUUUGGCAUUUGGUCUUUUGUUUCCUUUGUGGCCAACCAAAGAAAGCCAUUAGAGAAAAU-UUCUU
.......((((((((((((......((..((((((...((((((...............))))))))))))...))....)))))))))-))).. ( -28.26)
>DroYak_CAF1 80922 94 - 1
UUGAAUUGAAAUUUUCUCUCCUUUUGUGGCUUUGGCAUUUGGUCUUUUGUUUCCUUUGUGGCCAACCAAAGAAAGCCAUUAGAGAAAAU-UUCUU
.......((((((((((((......((((((((((...((((((...............)))))))))....))))))).)))))))))-))).. ( -28.46)
>DroAna_CAF1 71107 95 - 1
UUGAAUUGAAAAUUUCUCUCCUUUUGCGGCAUUUGGCUUUGGUCUUUUGUUUCCAUUGCGGGCGACCAACAAAAGCCAUUAAAGGAAAUUUUCCC
.......(((((((....((((((...(((.((((((..(((.(....)...)))..))((....))..)))).)))...))))))))))))).. ( -26.70)
>consensus
UUGAAUUGAAAUUUUCUCUCCUUUUGUGGCUUUGGCAUUUGGUCUUUUGUUUCCGUUGUGGCCAACCAAAGAAAGCCAUUAGAGAAAAU_UUCUU
.......((((((((((((......((((((((.....((((((...............))))))......)))))))).))))))))).))).. (-19.22 = -19.94 +   0.72)

alignment

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secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:28 2006