| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,220,116 – 18,220,208 |
| Length | 92 |
| Max. P | 0.686487 |
| Location | 18,220,116 – 18,220,208 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 77.84 |
| Mean single sequence MFE | -20.44 |
| Consensus MFE | -13.52 |
| Energy contribution | -13.13 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.686487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18220116 92 + 22407834 -AAAUUGAAAAACGCG-AAAAUCAGUUUGCAUAUAUUUCGUGGCGUACAGUGCGUAUGAUUGACAUUAAAACAUUAAUUAUGCAAAGCGCAACG---------------------- -...........((((-(((...............))))))).......((((((((((((((..........))))))))))...))))....---------------------- ( -16.46) >DroPse_CAF1 70836 92 + 1 -AAGGCGGCAAAAGCG-CGAAUCAGUUUGCAUAUAUUUCACGGCGCACAGUGCGUAUGAUUGACAUUAAAACAUUAAUUAUGCAAAACGCAGUG---------------------- -...((((((...(((-((((...............)))...))))....)))((((((((((..........))))))))))....)))....---------------------- ( -19.86) >DroGri_CAF1 76411 102 + 1 -AAAUUGAA-AACGCG-AUAAGCAUUGCGCAUAUAUUUCAUGGCACACAGUGCGUAUGAUUGACAUUAAAACAUUAAUUAUGCAAGGCGCAGACAGCGA-----GCAAAA------ -........-...((.-....((.((((((............((((...))))((((((((((..........))))))))))...))))))...))..-----))....------ ( -23.40) >DroWil_CAF1 94428 115 + 1 AGAAUUGGA-AAUGCGCAAAAUCAGUUUGCAUAUAUUUCAUGGCACACAGUGCGUAUGAUUGACAUUAAAACAUUAAUUAUGCAAAACGCAGACAGACAAACAGAGAAAAAGAGAC .........-..............((((((............((((...))))((((((((((..........)))))))))).....))))))...................... ( -19.40) >DroAna_CAF1 58496 92 + 1 -AAAUUGCAAAACGCG-AAAAUCAGUGUGCAUAUAUUUUCCGGCACACAGUGCGUAUGAUUGACAUUAAAACAUUAAUUAUGCAAAGCGCAUGG---------------------- -...((((.....)))-)......((((((............)))))).((((((((((((((..........))))))))))...))))....---------------------- ( -22.00) >DroPer_CAF1 71786 92 + 1 -AAGGCGGAAAACGCG-CGAAUCAGUUUGCAUAUAUUUCACGGCGCACAGUGCGUAUGAUUGACAUUAAAACAUUAAUUAUGCAAAACGCAGUG---------------------- -...(((.....)))(-((((....)))))........(((.((((.....))((((((((((..........)))))))))).....)).)))---------------------- ( -21.50) >consensus _AAAUUGGAAAACGCG_AAAAUCAGUUUGCAUAUAUUUCACGGCACACAGUGCGUAUGAUUGACAUUAAAACAUUAAUUAUGCAAAACGCAGAG______________________ .............(((..........................((((...))))((((((((((..........))))))))))....))).......................... (-13.52 = -13.13 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:21 2006