| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,217,686 – 18,217,777 |
| Length | 91 |
| Max. P | 0.978368 |
| Location | 18,217,686 – 18,217,777 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 84.62 |
| Mean single sequence MFE | -27.07 |
| Consensus MFE | -24.00 |
| Energy contribution | -23.38 |
| Covariance contribution | -0.62 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.29 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.81 |
| SVM RNA-class probability | 0.978368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18217686 91 - 22407834 GUAGGGGCUGUUGUUUGGAGGCUGCGGCAUACGUUGGUUGGUUUUUGGCUAAAUCUUUUUUGUCUGGUUCCAUACGACAACCAGCUUAUUA (((...(((((.(((....))).))))).)))((((((((.....(((...((((..........))))))).....))))))))...... ( -25.10) >DroSec_CAF1 60627 91 - 1 GUAGGGGCUGUUGUUUGGAGGCUGCGGCAUACGUUGGUUGGUUUUUGGCUAAAUCAGUUUUUUUUGGUUCCAUACGACAGCUAGCUUAUUA ((((((((((((((.(((((.(..((((....)))).(((((((......)))))))........).))))).)))))))))..))))).. ( -27.90) >DroSim_CAF1 64919 90 - 1 GUAGGGGCUGUUGUUUGGAGGCUGCGGCAUACGUUGGUUGGUUUUUGGCUAAAUCAGUUUUUUUUGGUUCCAUACGACAGCU-GCUUAUUA ..((.(((((((((.(((((.(..((((....)))).(((((((......)))))))........).))))).)))))))))-.))..... ( -29.10) >DroYak_CAF1 60903 90 - 1 AUAAGGGCUGUUGUUUGGAAGCUGCCUAUGUUGUUGGUUGGAAUUUGGCUAGAACAGUUUU-UUUGGUACCAAGCGACUGCCAAUUUAUUA .....(((.(((((((((....((((..((((.(((((..(...)..))))))))).....-...))))))))))))).)))......... ( -26.20) >consensus GUAGGGGCUGUUGUUUGGAGGCUGCGGCAUACGUUGGUUGGUUUUUGGCUAAAUCAGUUUUUUUUGGUUCCAUACGACAGCCAGCUUAUUA ((((((((((((((.(((((.(...........(((((..(...)..))))).............).))))).)))))))))..))))).. (-24.00 = -23.38 + -0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:20 2006