| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 18,199,721 – 18,199,811 |
| Length | 90 |
| Max. P | 0.953978 |
| Location | 18,199,721 – 18,199,811 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 71.57 |
| Mean single sequence MFE | -33.22 |
| Consensus MFE | -12.25 |
| Energy contribution | -13.62 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.37 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.953978 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 18199721 90 - 22407834 CUUCCGCAUCCGCAUCCGCACACC------CACUCGCAUUCGCAUCCGCAUCAUUAUCACGCCCAUGUGGGUGGUGCAGCGGUGA----GUGGUGGGGUC----- ...((.((.((((..((((.((((------.((((((((..((.................))..))))))))))))..))))...----)))))).))..----- ( -33.23) >DroVir_CAF1 65702 95 - 1 CAGCCACAUAGCCAUGCCCACACA------CAUUCGCAUCCACAUUCGCAUCAUUAUCAUGCACACGAU-GUGGCGCAUUCGUUGCUGCAUCAUGGG---CCAAC ...............(((((....------.................((((.......))))....(((-(..((((....).)))..)))).))))---).... ( -22.80) >DroPse_CAF1 46321 81 - 1 CAUCCCCAUCCGCAUCCGCAUCCG------CACUCGCACUCGCAUCCGCAUCAUUAUCAUGCACAC------CAUGCGGUCGUGG----GUGGCUCG-------- .....((((((((..((((((..(------(....))..........((((.......))))....------.))))))..))))----))))....-------- ( -27.90) >DroSim_CAF1 43316 84 - 1 CUUCCGCA------UCCGCACACC------CACUCGCAUCCGCAUACGCAUCAUUAUCACGCCCAUGUGGGUGGUGCAGCGGUGG----GUGGUGCGGUC----- ........------.(((((((((------(((.(((....((....))..........(((((....))))).....)))))))----)).))))))..----- ( -37.90) >DroEre_CAF1 42869 96 - 1 CUGCCGCAUCCGCACACCCACACCCACGCCCACUCGCAUCCGCAUCCGCAUCAUUAUCACGCCCAUGUGGGUGGUGCAGCGGUGG----GCGGUGCGGUC----- ..((((((.((((.......((((...((((((((((((..((.................))..)))))))))).))...)))).----)))))))))).----- ( -40.33) >DroYak_CAF1 42766 90 - 1 CUUCCGCAUCCGCAUUCGCACACC------CACUCGCAUCCGCAUCCGCAUCAUUAUCACGCCCAUGUGGGUGGUACAGCGGUGG----GCGGUGCGGUC----- ...(((((.((((..((((....(------(((((((((..((.................))..))))))))))....))))...----)))))))))..----- ( -37.13) >consensus CUUCCGCAUCCGCAUCCGCACACC______CACUCGCAUCCGCAUCCGCAUCAUUAUCACGCCCAUGUGGGUGGUGCAGCGGUGG____GUGGUGCGGUC_____ ..............................(((.(((..((((....(((((((..(((((....))))))))))))....))))....)))))).......... (-12.25 = -13.62 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:10 2006