Locus 6477

Sequence ID 2L_DroMel_CAF1
Location 18,198,610 – 18,198,701
Length 91
Max. P 0.928250
window10338

overview

Window 8

Location 18,198,610 – 18,198,701
Length 91
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 73.09
Mean single sequence MFE -14.63
Consensus MFE -3.02
Energy contribution -3.78
Covariance contribution 0.76
Combinations/Pair 1.46
Mean z-score -1.98
Structure conservation index 0.21
SVM decision value 1.19
SVM RNA-class probability 0.928250
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18198610 91 - 22407834
UUCAAUGAUAUCUUUACACAUUCAAUGACC-UAGCUAGCUUUAGUUUGUUAGGUGCC--UUCUCUUGA-GUUACCCACAAGAGCUACAAUAUUUC
..((.(((.............))).))(((-((((.(((....))).)))))))...--..((((((.-(.....).))))))............ ( -16.22)
>DroSec_CAF1 41598 88 - 1
UU---UGAUAUCUUCACACAUUCAAUGACC-UAGCUAGCUUUCGUUUGCUAGUUUUC--UCCUCUUGA-AUUACCCACAAGGGCUACAAUAUUUC
.(---((............((((((.((..-.(((((((........)))))))...--))...))))-))..(((....)))...)))...... ( -15.70)
>DroSim_CAF1 42205 88 - 1
UU---UGAUAUCUUCACACAUUCAAUGACC-UAGCUAGCUUUCGUUUGUUAGUUUUC--UUCUUUUGA-AUUACCCACAAGGGCUACAAUAUUUC
.(---((............((((((.((..-.(((((((........)))))))...--.))..))))-))..(((....)))...)))...... ( -14.00)
>DroEre_CAF1 41795 86 - 1
UU---UGAUAUCUUCAAGCAUUC---AUUUAUAAAUAUAUUUUGUUUGUAAGUUGCUC---CUUUACAAUUUUCCCACUAGAGCAACCAUAUUUC
((---(((.....))))).....---..(((((((((.....)))))))))(((((((---...................)))))))........ ( -14.21)
>DroYak_CAF1 41691 89 - 1
UU---UGUUAUCUUUGGG--UUGAAUGUCUGUCGCUAUAUUCUGUUUUUUAGUUUCUUUUUCUUUUGA-AUUCCCCAGAAGAACAACAGUAUUUC
.(---((((...((((((--..((((((........)))))).................(((....))-)...))))))..)))))......... ( -13.00)
>consensus
UU___UGAUAUCUUCACACAUUCAAUGACC_UAGCUAGCUUUCGUUUGUUAGUUUCC__UUCUUUUGA_AUUACCCACAAGAGCUACAAUAUUUC
................................(((((((........))))))).......((((((..........))))))............ ( -3.02 =  -3.78 +   0.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:08 2006