Locus 6476

Sequence ID 2L_DroMel_CAF1
Location 18,196,920 – 18,197,024
Length 104
Max. P 0.618658
window10337

overview

Window 7

Location 18,196,920 – 18,197,024
Length 104
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 83.02
Mean single sequence MFE -26.42
Consensus MFE -16.31
Energy contribution -17.55
Covariance contribution 1.24
Combinations/Pair 1.19
Mean z-score -1.93
Structure conservation index 0.62
SVM decision value 0.17
SVM RNA-class probability 0.618658
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18196920 104 - 22407834
ACUAGUUAGCAAGUGACUCUAGUGUGCACAGAGUGAGGUUUUAACUAGAGGAUAGAACAUAAGGA---UUGAUUGAUUAAAGCACAAUGUUCUGCUAACGAAUCAAU
....((((((......(((((((....((........))....)))))))...(((((((...(.---((((....))))..)...)))))))))))))........ ( -23.40)
>DroSec_CAF1 39881 106 - 1
ACUAGUUAGCAAGUGACUCUGCUGCGCACAGAGUGAGGUUUUAACUGGAGGGUAGAACAUAAAGAACAUUGAGU-AUUAAAGCACAAUGUUCUGCUAACGAAUCAAU
....((((((...(.((((((.......)))))).).((((((.((....))))))))....(((((((((.((-......)).)))))))))))))))........ ( -30.20)
>DroSim_CAF1 40488 106 - 1
ACUAGAUAGCAAGUGACUCUGCUGCGCACAGAGUGAGGUUUUAACUGGAGGGUAGAACAUAAAGAACAUUGAGU-AUUAAAGCACAAUGUUCUGCUAACGAAUCAAU
....(.((((...(.((((((.......)))))).).((((((.((....))))))))....(((((((((.((-......)).))))))))))))).)........ ( -26.00)
>DroEre_CAF1 40073 102 - 1
UCUAGUUAGCAAGUGACUCUGCCGUGCACGGAGUGAGAUUUUAACUGG-GGGUGUAGCAUAAAGA---UUUCGC-AUUUAGUCACAAUGUUCUUCUAAUACAUCAAU
(((((((((....(.((((((.......)))))).)....))))))))-)((((((.....((((---....((-(((.......)))))))))....))))))... ( -22.70)
>DroYak_CAF1 39976 99 - 1
UCUAGUUAGCAAGUGAUUCU---GUGCACAGAGUGAGAUUUUUACUUG-GGGUAACACAUAAGGA---UUGAGU-AGUAGAGCACAAUGUUCUGCUACUAAAUCAAU
....((((.(((((((((((---(....))))))........))))))-...)))).......((---((.(((-((((((((.....))))))))))).))))... ( -29.80)
>consensus
ACUAGUUAGCAAGUGACUCUGCUGUGCACAGAGUGAGGUUUUAACUGGAGGGUAGAACAUAAAGA___UUGAGU_AUUAAAGCACAAUGUUCUGCUAACGAAUCAAU
.((((((((.(..(.((((((.......)))))).)..).))))))))..((((((((((..........................))))))))))........... (-16.31 = -17.55 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:07 2006