Locus 6475

Sequence ID	2L_DroMel_CAF1
Location	18,193,845 – 18,193,938
Length	93
Max. P	0.566670

overview

Window 6

Location	18,193,845 – 18,193,938
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	80.56
Mean single sequence MFE	-19.24
Consensus MFE	-12.46
Energy contribution	-13.38
Covariance contribution	0.92
Combinations/Pair	1.14
Mean z-score	-1.66
Structure conservation index	0.65
SVM decision value	0.07
SVM RNA-class probability	0.566670
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18193845 93 - 22407834
AAAGAAAAUUAAGCAAAAGCAUACAGUUGAGUGGCUUUGUAAUUCUGAACUAAGUGGUUCGCAUGUCUUGCUGUGCAAGAAAAGAGAAGAGCA
............((.(((((.(((......))))))))....(((((((((....))))).....((((((...))))))....))))..)). ( -19.90)
>DroSec_CAF1 36798 93 - 1
AAGGAAAAUUAAGCAAAAGCACACAGUCCAGUGGCUUUAUAAUUCUGAACUAAGUAGUUCGCAUGUCUUGCUGUGCAAGAAAAGAGGAGAGGA
............((.(((((.(((......))))))))........(((((....)))))))...((((((...))))))............. ( -20.30)
>DroSim_CAF1 37411 93 - 1
AAGGAAAAUUAAGCAAAAGCACACAGUCCAGUGGCUUUAUAAUUCUGAACUAAGUAGUUCGCAUGUCUUGCUGUGCAAGAAAAGAGAAGAGGA
............((.(((((.(((......))))))))........(((((....)))))))...((((((...))))))............. ( -20.30)
>DroEre_CAF1 36961 89 - 1
ACAGAAAAUUACGCUUAAGCAAACAGUUAUGUGGCUUUAUAAUUCCGAACU----AGUUCGCAUGUCUUACUGUGUAAGAAAAGCGAAUAGCA
............(((.((((..(((....))).))))..............----.((((((...((((((...))))))...))))))))). ( -18.80)
>DroYak_CAF1 36812 75 - 1
AAAGAA-----CGC-AAAGCAA--------GUGGCUUUAUAAUUCAGAACU----AGUUCGAAUGUCUUUCUGUGUAAGAAAGGAGAACAGCA
......-----.((-(((((..--------...))))).............----.((((.....(((((((.....))))))).)))).)). ( -16.90)
>consensus
AAAGAAAAUUAAGCAAAAGCAAACAGUCCAGUGGCUUUAUAAUUCUGAACUAAGUAGUUCGCAUGUCUUGCUGUGCAAGAAAAGAGAAGAGCA
............((.(((((.(((......))))))))........(((((....)))))))...((((((...))))))............. (-12.46 = -13.38 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:05 2006