Locus 6474

Sequence ID 2L_DroMel_CAF1
Location 18,193,386 – 18,193,487
Length 101
Max. P 0.814432
window10335

overview

Window 5

Location 18,193,386 – 18,193,487
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 88.22
Mean single sequence MFE -26.93
Consensus MFE -21.81
Energy contribution -21.81
Covariance contribution 0.00
Combinations/Pair 1.15
Mean z-score -1.71
Structure conservation index 0.81
SVM decision value 0.66
SVM RNA-class probability 0.814432
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18193386 101 - 22407834
UUAUGGGAGGAAGGCUUGGUCUCACCAGUUUUCAGCCUCUUCUCAUAUCAUCCUUAAAGAACAAGACUAACAUGUUGGCUUUUAGAAAUCUGGGAUGUUCA
.((((((((((.(((((((.....)))......)))))))))))))).((((((........(((.((((....)))))))..........)))))).... ( -28.67)
>DroSec_CAF1 36338 101 - 1
UUAUGGGAGGAAGGCUGGGUCUCACCAGCUUUCUGCCUCUGCUCAUAUCAUCCUUAAAGAACAAGACUUACAUGUUGGGUUUUAGAAAUCUGGGAUGUACA
.((((((.((((((((((......)))))))))).......)))))).((((((...(((((..(((......)))..)))))((....)))))))).... ( -32.10)
>DroSim_CAF1 36951 101 - 1
UUAUGGGAGGAAGGCUUGGUCUCACCAGCUUUCUGCCUCUGCUCAUAUCAUCCUUAAAGAACAAGACUUACAUGUUGGGUUUUAGAAAUCUGGGAUGUACA
.((((((.((((((((.((.....)))))))))).......)))))).((((((...(((((..(((......)))..)))))((....)))))))).... ( -27.60)
>DroEre_CAF1 36503 100 - 1
UUAUGGGAGGAAGGCUCGGCCUUACCAGUUUUCUGCUUGUUAUUAUAUCAUCCUUAAAGAACAAAACUUUCAUGUAGGGUUUUAGAAAUAUGGGAUGUAC-
..(..((.((((((((.((.....)))))))))).))..)........((((((........((((((((.....))))))))........))))))...- ( -21.99)
>DroYak_CAF1 36346 100 - 1
UUAUGGGUGGCAGGCUGGGCCUCUCCAGUUUUCUGCCUCUGAUUAUAUCAUCCUUAAA-AACAAUACUUUCAUAUAGCGUUUUAGAAAUAUGGGAUGUACA
..((.((.(((((((((((....))))))...))))).)).))...............-.....((((..(((((..(......)..)))))..).))).. ( -24.30)
>consensus
UUAUGGGAGGAAGGCUGGGUCUCACCAGUUUUCUGCCUCUGCUCAUAUCAUCCUUAAAGAACAAGACUUACAUGUUGGGUUUUAGAAAUCUGGGAUGUACA
....(((..(((((((.((.....)))))))))..)))..........((((((........((((((((.....))))))))........)))))).... (-21.81 = -21.81 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:04 2006