Locus 6473

Sequence ID 2L_DroMel_CAF1
Location 18,191,354 – 18,191,450
Length 96
Max. P 0.751517
window10334

overview

Window 4

Location 18,191,354 – 18,191,450
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 93.44
Mean single sequence MFE -12.96
Consensus MFE -10.50
Energy contribution -10.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.81
SVM decision value 0.48
SVM RNA-class probability 0.751517
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 18191354 96 + 22407834
GUUUUUGUCACUAUUUUUCUCCGUAUUUUUCCAUCAAUUCUUUGACUUAUUCAGCACUUGCCUGCUGACAUAUUCAAUGCAAGUUGGCAUUCUUUU
.....(((((((.....................((((....)))).....((((((......)))))).............)).)))))....... ( -13.20)
>DroSec_CAF1 34276 96 + 1
GUUUUUGUCGCUAUUUUUCUCCGUAUUUUUCCAUCAAUUCUUUGACUUAUUCAGCACUUGCCUGCUGACAUAUUCAAUGCAAGUUGGCAUUCUUUC
.........((((.....((..(((((......((((....)))).....((((((......)))))).......))))).)).))))........ ( -13.90)
>DroSim_CAF1 34887 96 + 1
GUUUUUGUCGCUAUUUUUCUCCGUAUUUUUCCAUCAAUUCUUUGACUUAUUCAGCACUUGCCUGCUGACAUAUUCAAUGCAAGUUGGCAUUCUUUC
.........((((.....((..(((((......((((....)))).....((((((......)))))).......))))).)).))))........ ( -13.90)
>DroEre_CAF1 34458 96 + 1
GUUUUCCUCGCUAUUUAUCUUCCUAUUUUUCCUUCAAUUCUUUGCCUUAUUCAGCACUUGCCUGCUGACAUAUUCAAUGCAAGUUGGCAUUCUUAC
..........................................((((....((((((......))))))(((.....)))......))))....... ( -11.80)
>DroYak_CAF1 34312 96 + 1
AUUUUUGUCGCUAUUUUUCUCCCUAUUUCCCCCUCAAUUCUUAGCCUUAUUCAGCACUUGCCUGCUGACAUAUUCAAUGCAAGUUGGCAUUCUUUC
.....((((((((............................)))).....((((((......)))))).................))))....... ( -11.99)
>consensus
GUUUUUGUCGCUAUUUUUCUCCGUAUUUUUCCAUCAAUUCUUUGACUUAUUCAGCACUUGCCUGCUGACAUAUUCAAUGCAAGUUGGCAUUCUUUC
..................................................((((((......)))))).......(((((......)))))..... (-10.50 = -10.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:12:03 2006